Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_I14.2
(1296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 136 8e-33
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 103 5e-23
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 101 2e-22
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 96 8e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 91 4e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 88 3e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 83 6e-17
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 81 4e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 4e-16
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 77 7e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 75 2e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 74 5e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 7e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 72 2e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 72 2e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 71 4e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 70 8e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 68 2e-12
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 66 8e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 3e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 60 5e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 4e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 47 5e-06
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 37 0.005
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.9
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 27 4.3
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 27 4.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 4.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 7.5
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 26 9.9
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 136 bits (328), Expect = 8e-33
Identities = 71/156 (45%), Positives = 97/156 (62%), Gaps = 9/156 (5%)
Frame = +1
Query: 553 ISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPI 732
+S+GINF+K+D I V+VSG + P+ F + L ++L N+ +GY +PTP+QKN+IPI
Sbjct: 144 VSTGINFEKYDDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
Query: 733 IMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD-----PKDLISXNGC----AQPQVIIVS 885
+ SGRDLM CAQTGSGKTA FL PI+++ P D + G A P +I++
Sbjct: 203 VTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILA 262
Query: 886 PTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQ 993
PTREL QI E RKF Y S ++ YGG + Q
Sbjct: 263 PTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQ 298
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 103 bits (247), Expect = 5e-23
Identities = 54/133 (40%), Positives = 78/133 (58%)
Frame = +1
Query: 595 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 774
+K+ G + P+P+ S+ L + + GY KPT IQ AIP I SGRD++G A+TG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 775 SGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLK 954
SGKT AFL+P+ ++D + L + G P II++PTREL +QIF E + F ++
Sbjct: 466 SGKTIAFLLPMFRH-IKDQRPLKTGEG---PIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 955 VAXAYGGTAVXHQ 993
AYGG + Q
Sbjct: 522 ACCAYGGAPIKDQ 534
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 101 bits (243), Expect = 2e-22
Identities = 53/127 (41%), Positives = 76/127 (59%)
Frame = +1
Query: 595 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 774
+ V G N P+P+ +FE A YVL V + G+ PTPIQ+ A P+ MSGRD++G + TG
Sbjct: 110 IVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATG 169
Query: 775 SGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLK 954
SGKT ++ +P I + P L+S P V++++PTREL +QI E KF S ++
Sbjct: 170 SGKTLSYCLPAIVHINAQP--LLSPGD--GPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 955 VAXAYGG 975
YGG
Sbjct: 226 NTCVYGG 232
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.3 bits (229), Expect = 8e-21
Identities = 48/133 (36%), Positives = 78/133 (58%)
Frame = +1
Query: 595 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 774
+ + G++ P P+ ++E A L +L + K Y++P+ IQ+ AIP+++ +DL+G A+TG
Sbjct: 237 ISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETG 296
Query: 775 SGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLK 954
SGKTAAF++P+I + + P L N P ++++PTREL QI E KF+ +
Sbjct: 297 SGKTAAFIIPLIIAISKLP-PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFR 355
Query: 955 VAXAYGGTAVXHQ 993
GG A Q
Sbjct: 356 CVSVVGGHAFEEQ 368
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 90.6 bits (215), Expect = 4e-19
Identities = 46/132 (34%), Positives = 77/132 (58%)
Frame = +1
Query: 598 KVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGS 777
+ G+ +F++ L + +L + K G++ PTPIQ+ IP+++ GRD++G A+TGS
Sbjct: 58 RTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGS 117
Query: 778 GKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKV 957
GKTAAF++P+I L K ++ + + +I+SP REL LQ + FS G+ L+
Sbjct: 118 GKTAAFVIPMIEHL----KSTLAN---SNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 958 AXAYGGTAVXHQ 993
GG ++ Q
Sbjct: 171 VAIVGGVSLEEQ 182
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 87.8 bits (208), Expect = 3e-18
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Frame = +1
Query: 445 NDYEDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDH--IAVK----VS 606
N+ E ++ E + +T P N T+ F+S ++G + + D IA K
Sbjct: 187 NEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAE 246
Query: 607 GENPPRPI----ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 774
G+ + SF++ NL + +L + G+ PT IQ IP+ + G+D++G A TG
Sbjct: 247 GDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTG 306
Query: 775 SGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLK 954
SGKTAAF+VPI+ LL PK + +V+I+ PTREL +Q + K + + +
Sbjct: 307 SGKTAAFIVPILERLLYRPKKV------PTTRVLILCPTRELAMQCHSVATKIASFTDIM 360
Query: 955 VAXAYGGTAVXHQGDTL 1005
V GG ++ Q L
Sbjct: 361 VCLCIGGLSLKLQEQEL 377
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 83.4 bits (197), Expect = 6e-17
Identities = 53/120 (44%), Positives = 68/120 (56%)
Frame = +1
Query: 598 KVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGS 777
KV+G NP PIE F L +N+ K + T IQ+ AIP I S RDL+ CA TGS
Sbjct: 39 KVTGNNPVDPIEEFPEGIL----CENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGS 94
Query: 778 GKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKV 957
GKT A+L PI+ L L G + IIV+PTREL QI+ + K S+G+ LK+
Sbjct: 95 GKTIAYLFPILQKL-----QLHVPGGY---RAIIVAPTRELCEQIYRQAEKLSFGTSLKI 146
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 4e-16
Identities = 49/130 (37%), Positives = 67/130 (51%)
Frame = +1
Query: 628 IESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPI 807
IE F L + + + + G+ T IQK +IP +++GRD++G A+TGSGKT AFL+P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 808 INMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVX 987
I ML NG VII+SPTREL LQIF ++ GG
Sbjct: 148 IEMLY--ALKFKPRNGTG---VIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRR 202
Query: 988 HQGDTLLXAV 1017
+ D L+ V
Sbjct: 203 AEADKLVKGV 212
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 4e-16
Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 691 YRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINML--LQDPKDLISXNGCAQ 864
Y++PTPIQ P +++GRD++G A+TGSGKT AF +P + L L D K +
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV-------- 236
Query: 865 PQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQ 993
P+V++VSPTREL +Q + G+ LK YGG Q
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQ 279
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 76.6 bits (180), Expect = 7e-15
Identities = 42/116 (36%), Positives = 68/116 (58%)
Frame = +1
Query: 637 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINM 816
FE L++ +L + +AG+ +P+PIQ+ +IPI +SGRD++ A+ G+GKTAAF++P +
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 817 LLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAV 984
+ D K ++ Q +I+ PTREL LQ + +KV GGT +
Sbjct: 106 V--DTKK-------SKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTL 152
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 75.4 bits (177), Expect = 2e-14
Identities = 39/108 (36%), Positives = 60/108 (55%)
Frame = +1
Query: 682 KAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXNGCA 861
K G++ PTPIQ+ AIP++++ RD++G AQTGSGKTAAF +P+I L +P +
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFA----- 117
Query: 862 QPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQGDTL 1005
++++PTREL QI + ++ GG + Q L
Sbjct: 118 ----VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 73.7 bits (173), Expect = 5e-14
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Frame = +1
Query: 487 KKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYV 666
K+ T+V T D++E FS + + ++ +I N P +F L +
Sbjct: 90 KRDNTFVTSLFTGDDSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQL 149
Query: 667 LDNVL-KAGYRKPTPIQKNAIPIIMS--GRDLMGCAQTGSGKTAAFLVPIINMLLQDPKD 837
D++ K PT IQ +P +++ +D AQTGSGKT A+L+PI+ L++ PK+
Sbjct: 150 ADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKN 209
Query: 838 LISXNGCAQPQVIIVSPTRELTLQIFNEXRKFS 936
L + + +I++PTREL QI+N K +
Sbjct: 210 LHTRT--SGIYAVIMAPTRELCQQIYNVANKLN 240
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 73.3 bits (172), Expect = 7e-14
Identities = 38/95 (40%), Positives = 58/95 (61%)
Frame = +1
Query: 634 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 813
SF++ N+ K++ + V G++K TP+Q NAIP+ + +DL+ A TGSGKT A+L+P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 814 MLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFN 918
+ + D +IV+PTREL QIFN
Sbjct: 62 KVTRRDTDETGLG------ALIVAPTRELATQIFN 90
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 2e-13
Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Frame = +1
Query: 640 ETANLRKYVLDNVLKAGYRKPTPIQKNAI-PIIMSGRDLMGCAQTGSGKTAAFLVPIINM 816
E A+L +++ +AG+ K TP+Q+ + + + + + A+TG+GKT AFL+
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKD 100
Query: 817 LLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTA 981
+L+ L S ++ +I+SPTREL LQIF E RK +YG+ ++V+ A GG +
Sbjct: 101 VLKGKPRLNS----SKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNS 151
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 71.7 bits (168), Expect = 2e-13
Identities = 36/102 (35%), Positives = 60/102 (58%)
Frame = +1
Query: 631 ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPII 810
++F NL + + K + KPT +Q IP+ + G+DL+ A+TGSGKTAA+L+PI+
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 811 NMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFS 936
+LL+ + + G +++ PTREL Q++N K +
Sbjct: 74 ELLLKQKQIDENQRGIF---ALLLVPTRELAQQVYNVLEKLT 112
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.9 bits (166), Expect = 4e-13
Identities = 49/159 (30%), Positives = 76/159 (47%)
Frame = +1
Query: 517 PTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYR 696
PT + T + S S N+++F + + + + ++ +L +L ++ KAG+
Sbjct: 86 PTIEMTSLGSKVTSK--NYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFS 143
Query: 697 KPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVI 876
KP PIQ IP G D++G A TGSGKT AF +PI+ L++ Q +
Sbjct: 144 KPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV-------DAKYVQAL 196
Query: 877 IVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQ 993
+V+PTREL QI ++V GG AV Q
Sbjct: 197 VVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQ 235
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 69.7 bits (163), Expect = 8e-13
Identities = 41/121 (33%), Positives = 63/121 (52%)
Frame = +1
Query: 631 ESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPII 810
+SF + +++D + +PT IQ+ I I+ GR+ +G A+TGSGKTAAF +PII
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 811 NMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXH 990
+DP + + +I++PTREL +QI + LK A GG +
Sbjct: 67 EKWSKDPSGIFA---------LILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIR 117
Query: 991 Q 993
Q
Sbjct: 118 Q 118
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 68.1 bits (159), Expect = 2e-12
Identities = 42/130 (32%), Positives = 66/130 (50%)
Frame = +1
Query: 595 VKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTG 774
V+++ + SFE NL++ +L + GY P+ +Q AI I GRD++ AQ+G
Sbjct: 9 VELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSG 68
Query: 775 SGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLK 954
+GKTA F + I+ + +D Q +I+SPTREL +QI N ++
Sbjct: 69 TGKTATFSIGILQSIDLSVRD---------TQALILSPTRELAVQIQNVVLALGDHMNVQ 119
Query: 955 VAXAYGGTAV 984
GGT+V
Sbjct: 120 CHACIGGTSV 129
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 66.5 bits (155), Expect = 8e-12
Identities = 38/101 (37%), Positives = 52/101 (51%)
Frame = +1
Query: 703 TPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIV 882
T IQK IP + GRD++G A+TGSGKT AF+VP+I L + K S +G +++
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYR--KKWTSLDGLG---ALVI 117
Query: 883 SPTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQGDTL 1005
SPTREL +Q F K GG + + L
Sbjct: 118 SPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.3 bits (142), Expect = 3e-10
Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
Frame = +1
Query: 466 IGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFET 645
+ E K + + ++E S + N + ++ +P ++SFE
Sbjct: 59 VDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEE 118
Query: 646 ANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSG--RDLMGCAQTGSGKTAAFLVPIINML 819
L+ +L + ++KP+ IQ+ A+P+++S R+++G +Q+G+GKTAAF + +++ +
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV 178
Query: 820 LQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSXLKVAXAYG 972
+PQ I ++P+REL QI + + G +V A+G
Sbjct: 179 ---------DASVPKPQAICLAPSRELARQIMDVVTEM--GKYTEVKTAFG 218
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 60.5 bits (140), Expect = 5e-10
Identities = 35/110 (31%), Positives = 58/110 (52%)
Frame = +1
Query: 583 DHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGC 762
D + V N I++F+ NL+ +L + G+ +P+ IQ+ AI I+ RD++
Sbjct: 3 DQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQ 62
Query: 763 AQTGSGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQI 912
AQ+G+GKTA F + ++ + Q Q +I++PTREL QI
Sbjct: 63 AQSGTGKTATFSISVLQKI---------DTSLKQCQALILAPTRELAQQI 103
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.0 bits (124), Expect = 4e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Frame = +1
Query: 652 LRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDP 831
L+ +L + +G+ P+ +Q+ IP + G D++ A++G GKTA F++ + + +P
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI--EP 115
Query: 832 KDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFS-YGSXLKVAXAYGG 975
D + V+++ TREL QI NE +FS Y ++ A YGG
Sbjct: 116 VD-------GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 5e-06
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Frame = +1
Query: 619 PRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMS----------GRDLMGCAQ 768
P F + N+ +++ + K + +Q +P+++ G D+ A
Sbjct: 122 PNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAA 181
Query: 769 TGSGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVSPTRELTLQIFNEXRKFSYGSX 948
TGSGKT ++++PI+ L S + + +++ PTRELT+Q+ + G+
Sbjct: 182 TGSGKTLSYVIPIVQCL--------SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAG 233
Query: 949 LKVAXAYGGTAVXHQ 993
L+V G ++ H+
Sbjct: 234 LQVCAWTGQKSLRHE 248
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 37.1 bits (82), Expect = 0.005
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Frame = +1
Query: 709 IQKNAIPIIM-SGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISXNGCAQPQVIIVS 885
IQ + PI + +++ CA TG+GKT ++ I+N L + ++ +S N +++ ++
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFN-LQNFKIVYIA 581
Query: 886 PTRELTLQIFNEXRKFSYGSXLKVAXAYGGTAVXHQ 993
P + L ++ N K ++VA G + + Q
Sbjct: 582 PLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQ 617
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 712 QKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 828
Q +AI + +G ++ T SGK+ + +PI+ LL+D
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLED 354
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +1
Query: 562 GINFDKFDHIAVKVSGE--NPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAI 726
G+ F ++ +V G+ +P +P+ R Y V KA TPI NAI
Sbjct: 253 GVFLIDFSYLLTQVEGKLGSPEKPLSDLGLVTYRSYWKMRVAKALLEITTPISINAI 309
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 541 RFPSHHLLVLEAHRLPASSFPRFP 470
R PS LE H LP SS P FP
Sbjct: 146 RTPSRSSNTLELHSLPISSSPSFP 169
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 565 INFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTP 708
+NF+ VK+SG N E+ + + +L N YR+PTP
Sbjct: 824 VNFNNGSMEGVKLSGGNDGGGTENHRDSTVGGGILKNPKAYPYREPTP 871
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 7.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 577 KFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDL 753
+F +++ + EN P+ + SF +L+ D + Y +P IP I SG L
Sbjct: 516 EFPKHSLRDNSENAPQILSSFHDLSLQNESFDEMFNGRYENGSP-----IPFISSGSGL 569
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 445 NDYEDNEIGENGETKKPVTYVPPEPTNDETEI---FSSTISSGINFDKFDHIAVKVSGE 612
N ++ EI ++ E+ T V EPT +ETE +++ G DK A SG+
Sbjct: 140 NTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSEASSASGD 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,050
Number of Sequences: 5004
Number of extensions: 66425
Number of successful extensions: 218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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