Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I13.2
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    25   4.5  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    25   4.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    24   7.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    24   7.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    24   7.9  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 24.6 bits (51), Expect(2) = 4.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 744 PXPP*XXFXXGXXXXXPPPPPP 679
           P PP      G     PPPPPP
Sbjct: 635 PPPPMGLPAVGAGAPPPPPPPP 656



 Score = 23.4 bits (48), Expect(2) = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 696 PPPPPPGG 673
           PPPPPP G
Sbjct: 652 PPPPPPSG 659


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 24.6 bits (51), Expect(2) = 4.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 744 PXPP*XXFXXGXXXXXPPPPPP 679
           P PP      G     PPPPPP
Sbjct: 461 PPPPMGLPAVGAGAPPPPPPPP 482



 Score = 23.4 bits (48), Expect(2) = 4.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 696 PPPPPPGG 673
           PPPPPP G
Sbjct: 478 PPPPPPSG 485


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 23.8 bits (49), Expect(2) = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 744 PXPP*XXFXXGXXXXXPPPPPPGG 673
           P PP            PPPPP GG
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGG 308



 Score = 23.4 bits (48), Expect(2) = 7.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 696 PPPPPPGGXXXT 661
           PPPPPP G   T
Sbjct: 319 PPPPPPRGSPPT 330


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 23.8 bits (49), Expect(2) = 7.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 744 PXPP*XXFXXGXXXXXPPPPPPGG 673
           P PP            PPPPP GG
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGG 293



 Score = 23.4 bits (48), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 696 PPPPPPGGXXXT 661
           PPPPPP G   T
Sbjct: 304 PPPPPPRGSPPT 315


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 23.8 bits (49), Expect(2) = 7.9
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 744 PXPP*XXFXXGXXXXXPPPPPPGG 673
           P PP            PPPPP GG
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGG 287



 Score = 23.4 bits (48), Expect(2) = 7.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 696 PPPPPPGGXXXT 661
           PPPPPP G   T
Sbjct: 298 PPPPPPRGSPPT 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,421
Number of Sequences: 27780
Number of extensions: 68414
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)