Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_I12.2
(1284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 48 4e-06
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 47 6e-06
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 46 9e-06
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 45 3e-05
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 31 0.45
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 31 0.45
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 30 0.60
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 29 1.0
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 1.8
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce... 28 2.4
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 28 2.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 2.4
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 4.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 7.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 7.4
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 7.4
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 27 7.4
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 26 9.8
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 9.8
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +2
Query: 662 IKLERKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLKEQV 841
+K R +RNR+AASKCR++K LE+ I ++ L +V +LR+ V LK Q+
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEKTAHIACEQSKALRILVSQLREEVICLKNQL 327
Query: 842 LEHANGGC 865
L H + C
Sbjct: 328 LAHQDCNC 335
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +2
Query: 665 KLERKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLKEQVL 844
K R +RNR+AASK R++K E I +LE+ ++ L ++ +L+ RLK Q+L
Sbjct: 12 KRRRILERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQLL 71
Query: 845 EHANGGCHIE 874
H C ++
Sbjct: 72 AHQGCQCSVK 81
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 46.4 bits (105), Expect = 9e-06
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 683 QRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLKEQVLEH 850
+RNR AA KCR+RK + +S L+ KV+ EN L+ V LR+ + LK ++ H
Sbjct: 480 ERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREEIVSLKTLLIAH 535
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 44.8 bits (101), Expect = 3e-05
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +2
Query: 593 PQTVPSAASTPPLSPIDMDTQEKI-KLERKRQ-----RNRVAASKCRRRKLERISKLEEK 754
P + A+ P +D E KL +Q RNR AA KCR +K + + L+++
Sbjct: 93 PSIISEASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQ 152
Query: 755 VKILKGENAELAQMVVKLRDHVHRLKEQVLEH 850
V EN EL Q LR+ + +L+ V H
Sbjct: 153 VNYYTSENKELLQSANDLREEIIKLRTLVFAH 184
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 30.7 bits (66), Expect = 0.45
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 719 RKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLKEQVLEHANGG 862
R L ++ K EE V++L E+AEL ++++ HRLK + E GG
Sbjct: 208 RYLIQVGKDEEAVRVLS-ESAELFPDSEEVQNEYHRLKSSIDEEFAGG 254
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 30.7 bits (66), Expect = 0.45
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 647 DTQEKIKLERKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHR 826
+T+EK+K K+ R+ +AA+ R RI L + +LK + E + ++
Sbjct: 127 ETEEKVKQYEKQNRDSIAANSARAAAEARI--LAQNEILLKRQKQEAREAAIREHQKEKE 184
Query: 827 LKEQV 841
+EQV
Sbjct: 185 RREQV 189
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 674 RKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLKEQV 841
+++ +NR A R+RK + + LE +V LK ++ +LR V +L+E++
Sbjct: 81 KRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 136
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 665 KLERKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRD 814
+L++K+QR+ ASK +LER +L K+ + N + + + KLR+
Sbjct: 173 RLKQKKQRSEFRASKREMERLERDQELRNKI---EERNKKELETIEKLRE 219
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +2
Query: 536 YADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCR 715
Y R R P+P + S S P ++ D + +++ K Q N + R
Sbjct: 256 YVRTSRQYSRSPSPDFRTRNHQFHSRDSQP-ITQRHTDIESRLQ---KMQDNAKELDESR 311
Query: 716 RRKLERISKLE-EKVKILKGENAELAQMVVKLRDHVHRLKEQV 841
R+K+E + K E ++ + L+ E + A+ D + +++++
Sbjct: 312 RKKIELLEKKERDEEQFLEKERRDTARKWDNQGDFIRNMRKEI 354
>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 728 ERISKLEEKVKILKGENAELAQMVVKLR 811
E++ KLEEK+ L + ELAQ V +LR
Sbjct: 116 EQVQKLEEKMSSLVVNDPELAQKVGRLR 143
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 479 EALDKLHHGEAVTPLGRRVYADLDRPLERYP 571
EA + L+H E VT ++ + DRP+ YP
Sbjct: 86 EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 647 DTQEKIKLERKRQRNRVAASKCRRRK-LERISKLEEKVKILKGENAELAQMVVKLRD 814
D EK+ E Q + + K K ++R S+LEEK+ L+ + +++ L+D
Sbjct: 130 DQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKD 186
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 536 YADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRV 697
+ D P Y TP K VP +S+PPLS Q + +R +R+
Sbjct: 171 FEDASSPQSSYHTP-TKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRRSESRL 223
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 787 STDGGETKGPRAQAKGAGPRACEWWLP 867
S DG + GP+ +K RA EW P
Sbjct: 27 SKDGNHSNGPQTPSKSIFQRAKEWLTP 53
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 7.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 653 QEKIKLERKRQRNRVAASKCRRRKLERISKLEEKVKILKGENAELAQMVVKLRDHVHRLK 832
QE + L K ++ ++ AS + E I K E+ + +K +N ELA M+++ H L+
Sbjct: 493 QEHLDLLSKYKQIQLKASSAQ----EAIDKKEKMEREMKNKNLELADMILERDRARHELE 548
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 536 YADLDRPLERYPTP-----IVKDEPQTVPSAASTPPLSPIDMDTQEKIKL 670
Y D R ++R TP I K+E TVP PP D +T K+ +
Sbjct: 252 YKDSKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPI 301
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 586 LHDGSGVSL*RPVQIGIYSTSERRHCLAVVQLV*RFDERFARTFLVP 446
L+ G G + I ++ +R+H A +QL + ERF F P
Sbjct: 501 LNAGDGAFYGPKIDITVFDALKRQHQCATIQLDFQLPERFQLEFHAP 547
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 9.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 497 AAC-LALRRKVRAYISCSSVGATAGNKTGAPGVGVAVXTIPC*MINFSNSGDPSFNICKA 321
A C L L+ K+ +I C A +TG GV V + T + +S+ D ++ I A
Sbjct: 90 AICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQY-LRKYSHGKDMTYIIDSA 148
Query: 320 GE 315
E
Sbjct: 149 TE 150
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +2
Query: 572 TPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKL 727
+P+ PSA + P S I++ E + + K+++ K R+K+
Sbjct: 72 SPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRSRRNRKASRKKI 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,133
Number of Sequences: 5004
Number of extensions: 65374
Number of successful extensions: 204
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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