Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I09.2
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...   120   4e-28
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    29   1.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   3.2  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   5.6  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   7.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   9.7  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    26   9.7  

>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  120 bits (289), Expect = 4e-28
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 5/239 (2%)
 Frame = +3

Query: 144 KKFVAFTQTSESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDSIKTSVDRKKLEQLFNKY 323
           + F   T TS   A+  L + ++  D+A   + Q       +        K+L  +F+++
Sbjct: 10  RAFSKATSTSSKAALSWLKKYNFDYDVAYTKWIQQKSREEAE--------KQLNNVFSQF 61

Query: 324 RDQQELDKITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEFTKDEFIMGMVELAVD 503
             +++ D I  DG ++    L++S E    L++++  K+    EF ++ F+ G + L+  
Sbjct: 62  SSKEDKDLIELDGSVQLFTALDISLEDPETLLVSYFLKSPRMGEFHRESFVEGALNLSTT 121

Query: 504 GLDKLKAKLPT-LESELKDLNKFKDFYHFTFNYAKNAGQKGLDLDMAIVYWNIVLRGRFK 680
            LD+LK  +   ++    D +  K  Y +T+  A + G+K L   +AI ++ I+L+  F 
Sbjct: 122 SLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKTLSTSIAIEFFQILLKDTFP 181

Query: 681 FLDAWCKFLTEHH--KRSIPKDTWNLLLDFATQI--DDGMSNYDAEGAWPVLIDDFVEW 845
            LD W  FL      ++S+PKDTWN L DF+  +  D   SNYD EGAWP LID+FV +
Sbjct: 182 LLDDWIAFLKVSPIIEKSLPKDTWNELWDFSVFVKSDPNCSNYDFEGAWPTLIDEFVSY 240


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 144 KKFVAFTQTSESTAIYCLSQNDWKLDLASDNYFQNPDAYYKDSIK 278
           K+FV +T+ S     Y  SQN     L + +  Q+PDA ++D++K
Sbjct: 145 KRFVTYTKASMPVVEYLKSQN----RLITIDAEQDPDAVFEDTVK 185


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +3

Query: 288 DRKKLEQLFNKYRDQQELDKITADGVMKFLEDLNLSPESILVLIIAWKCKAAVQCEF-TK 464
           ++   +QLF K  D+Q++  IT +  + FLE   L+P+   VL   W+   A    F T 
Sbjct: 9   EQTAFDQLF-KIADKQDIGVITGEEAVPFLEKSGLAPQ---VLGQIWQIADAENRGFLTF 64

Query: 465 DEFIMGM--VELAVDGLD---KLKAKLP 533
             F++ M  V LA + L    K   K+P
Sbjct: 65  SGFVIAMRLVALAQEKLPFDYKKSGKIP 92


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 517 NLSNPSTANS-TMPIINSSLVNSHCTAALHFHAIIKTKIDSGLKFRSSKNFMTPSA 353
           N  NPST N  T P+I ++ + S   A    H  ++T      KFR  +    PSA
Sbjct: 484 NDGNPSTMNFLTSPVIVAAKIFSSDLAFDPTHDTLQTPDGKAFKFRPPQGVELPSA 539


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 237 YFQNPDAYYKDSIKTSVDRKKLEQLFNKYRDQQELDKIT 353
           Y +NP+      +     RK++++LF+  +D   LDK T
Sbjct: 329 YTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKST 367


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 231 DNYFQNPDAYYKDSIKTSVDRKKLEQLFNKYRDQQELDKITADGVMKFLEDLNL 392
           +NY ++  + YKD    ++DR  +E +F K+  Q          +  +L+D  L
Sbjct: 147 NNYREDDPSTYKD---INIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYL 197


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 609 AGQKGLDLDMAIVYWNIVLRGRFKFLDAWCKFLTEHHKRSIPKDT 743
           A  K LDLD+  VY    + G+  FL+        HH   IPK T
Sbjct: 440 AQYKALDLDLTYVYSE--MPGQLLFLNQLGVSYIRHHIFPIPKPT 482


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 207 DWKLDLASDNYFQNPDAYYKDSIKTSVDRKKLEQLFN-KYRDQQELDKITADGVMKFLED 383
           D+KL++ S+N   +    Y DSI + +    +E L N  +    ++ K   D   +  E 
Sbjct: 337 DYKLNVLSNNMENHNTRQYLDSITSEI----IENLRNLSFAPSVQMHKTPGDFTFENAEK 392

Query: 384 LNLSPESIL 410
            N++ E I+
Sbjct: 393 QNIAKEEIM 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,865,580
Number of Sequences: 5004
Number of extensions: 75592
Number of successful extensions: 268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)