Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I07.2
         (1313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    72   2e-13
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   1.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   7.6  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 427

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 70/311 (22%), Positives = 133/311 (42%), Gaps = 13/311 (4%)
 Frame = +2

Query: 173  LEVXRKNFKAALPLVAASVKXADFLVIXTEFTGIINGRDVSMFDTPEEYYKCTQKGSSEF 352
            +E+  KNF   L  +   V  A ++ I  EF+G++   +++  +T ++ Y+  +K S  +
Sbjct: 1    MEIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRY 60

Query: 353  LLIQFGLCAFHW-NHKEKHYMNDAYNFYLFPRGSPGPDRMFMCQSSSLDFLASQGFDFNK 529
             ++Q G+   +  N+ +   +    N     +      R F  ++SS+ FL  QGFDFNK
Sbjct: 61   TILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNK 120

Query: 530  LIKDGISYMTIPIECKLRENLTERQKTYSKGKDSIKVPDEHKAFVEDICNQVHQF----L 697
             + +G+ Y++   E  L + + ER  T       +   DE    + D  NQ+  +    L
Sbjct: 121  QLTEGVPYLSRIEERNLIDKVNER-STDDLTSSILDACDEE--ILVDARNQIKNWLSSEL 177

Query: 698  EEGQLDEMEIDKCNSFVRLLL-------FQELRARFKDKILVETKILENKNRLLN-VKRV 853
                   + I   N F+R  +       F  L++  K   L   K +EN     +   + 
Sbjct: 178  SHSTSKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQCSATSKS 237

Query: 854  KSQDDLKNHDALKKEREWEDFEDAVGFSKVARMISESEKLVVGHNMLLDVMHTLNHFFQP 1033
            + ++D+ +   +         +  VG   +   I + +K VV HN + D+++  + F   
Sbjct: 238  ELKEDIASDQLILNNLNL--IKQNVGLRHLWDYILKKKKSVVCHNGMADLVYLFSLFEGK 295

Query: 1034 XPAXYTQFKXL 1066
             P    +F  L
Sbjct: 296  VPETILEFSEL 306


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 416 RSCNASPYDSSEK-HTGQTVLVEIPKSLSECICNTPLVCQ 300
           RS NASP+DS +  H+G ++ +E   S    + N   V Q
Sbjct: 252 RSANASPFDSCDSFHSGSSIPIEPVSSRQSSVVNNNSVQQ 291


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 788 DKILVETKILENKNRLLNVKRVKSQDDLKNHDALKKEREWEDFEDAV 928
           DK+L   ++  +KN  L  K+    D +  H  LKK RE ++   A+
Sbjct: 844 DKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDEQSTAL 890


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,915,912
Number of Sequences: 5004
Number of extensions: 76680
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)