Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I06.2
         (1298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    91   2e-19
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.9  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 39/74 (52%), Positives = 51/74 (68%)
 Frame = +1

Query: 295 ASFTIADSIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*H 474
           A FTI+DS+YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y H
Sbjct: 196 APFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWH 255

Query: 475 FVDVV*LFLYISIY 516
           F DVV LFLY++IY
Sbjct: 256 FCDVVWLFLYLTIY 269


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 1256 GXPPPXXXPPXXXXXXXXPPPP 1191
            G PPP   PP        PPPP
Sbjct: 7    GNPPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 1256 GXPPPXXXPPXXXXXXXXPPPP 1191
            G PPP   PP        PPPP
Sbjct: 759  GGPPPPPPPPGVAGAGPPPPPP 780


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -1

Query: 1268 PXXXGXPPPXXXPPXXXXXXXXPPPP 1191
            P     PPP   PP        PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,016
Number of Sequences: 5004
Number of extensions: 32602
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)