Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I04.2
         (1356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    38   0.004

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 766 TYRKGNSLL*TGSTFTTDCGWGCMLRSGQMMLAQAL-VCH 882
           TYR G   L      T+D GWGCM+RS Q +LA  L +C+
Sbjct: 55  TYRSGIEGL---ENMTSDTGWGCMIRSTQTLLANCLRICY 91



 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 962  RKIIKWFGDKSSVNSPLSIHQMVSLGK 1042
            ++I+  F D+ S  +P SIHQ V++GK
Sbjct: 97   KEILALFADEPS--APFSIHQFVTMGK 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,088
Number of Sequences: 5004
Number of extensions: 59845
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)