Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I03.2
         (1275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   3.1  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    30   3.1  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    30   3.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   9.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   9.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   9.3  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 1230 PPPXXGXXXPPPXAFXXTPPP 1168
            PPP  G   PPP  F   PPP
Sbjct: 97   PPPMMGGIPPPPPMFGAPPPP 117


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 877 KDLNFLHYNTKHFKQNKTLWDYEC 806
           K  NFL +  K  K+NK ++DY C
Sbjct: 162 KTSNFLQFQFKFLKKNKKMYDYRC 185


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 877 KDLNFLHYNTKHFKQNKTLWDYEC 806
           K  NFL +  K  K+NK ++DY C
Sbjct: 162 KTSNFLQFQFKFLKKNKKMYDYRC 185


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 1230 PPPXXGXXXPPPXAFXXTPPP 1168
            PPP  G   PPP A    PPP
Sbjct: 281  PPPPAGGSPPPPRAGSPPPPP 301


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 1230 PPPXXGXXXPPPXAFXXTPPP 1168
            PPP  G   PPP A    PPP
Sbjct: 302  PPPPAGGSPPPPRAGSPPPPP 322


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 1230 PPPXXGXXXPPPXAFXXTPPP 1168
            PPP  G   PPP A    PPP
Sbjct: 287  PPPPAGGSPPPPRAGSPPPPP 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,914,785
Number of Sequences: 27780
Number of extensions: 333997
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)