Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_H24.2
(1292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.021
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.049
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.15
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.80
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.021
Identities = 29/102 (28%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Frame = +2
Query: 398 GGXXXXXXRGXFFFFXXGGGGXGXFFXXXKKPPPXGGXGGXFXGPXXXLXXKXXXXXXXX 577
GG F GGG G F PPP G G F G
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228
Query: 578 GGXGXXXPPGG-GXGXSXRGGGXXXKNXXXXGXXXGXXXXGG 700
G G PGG G G GGG G G GG
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 31.5 bits (68), Expect = 0.26
Identities = 26/79 (32%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Frame = +2
Query: 242 GGGXXPLGGGXG----GPXXXXXFXXXGGXPXXXGGKKXFFXGXXGXXXFXXXPXWGGXX 409
GGG GGG G GP F GG GG F G G F P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG---FEGGPGGFGGG 243
Query: 410 XXXXRGXFFFFXXGGGGXG 466
G F G GG G
Sbjct: 244 PGGFGGGLGGFGGGPGGFG 262
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.049
Identities = 39/165 (23%), Positives = 44/165 (26%), Gaps = 8/165 (4%)
Frame = -3
Query: 711 PPNPP--PXXXXPXXXPXXXXFFXXX-PPPLXEXPXPPPGGXXXPXPPXXXXXXXXXXXR 541
PP PP P P P PPP PP P P +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 540 XXXGPKKXPPXPPXGGGFFXXXKKXPXPPPPXXKKKKXPLXX*XFXPPXKGXXKKXXXPX 361
P PP KK P PPPP ++ + PP P
Sbjct: 290 ----PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRG-------KPPIGNGSSNSSLPP 338
Query: 360 XPXKXXFFPPXFXGXPPXXXKXFXXXGPPXPPPK-----GXXPPP 241
P PP PP PPP+ G PPP
Sbjct: 339 PPP-----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 32.3 bits (70), Expect = 0.15
Identities = 40/180 (22%), Positives = 42/180 (23%)
Frame = -3
Query: 777 PPPXXXXXXXXXXXGGGAXXXKPPNPPPXXXXPXXXPXXXXFFXXXPPPLXEXPXPPPGG 598
PPP G + PP PPP PPP P G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 597 XXXPXPPXXXXXXXXXXXRXXXGPKKXPPXPPXGGGFFXXXKKXPXPPPPXXKKKKXPLX 418
P G + P PP G P P PP P
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPG-RSAPALPPLGNA--SRTSTPPVPTPPSLPPSAPP-- 429
Query: 417 X*XFXPPXKGXXKKXXXPXXPXKXXFFPPXFXGXPPXXXKXFXXXGPPXPPPKGXXPPPP 238
PP P P PP PP PP PP PP P
Sbjct: 430 ---SLPPSAPPSLPMGAPAAPP----LPPSAPIAPPLPAG--MPAAPPLPPAAPAPPPAP 480
Score = 31.1 bits (67), Expect = 0.35
Identities = 38/163 (23%), Positives = 41/163 (25%), Gaps = 5/163 (3%)
Frame = -3
Query: 711 PPNPPPXXXXPXXXPXXXXFFXXXPPPLXEXPXPPP---GGXXXPXPPXXXXXXXXXXXR 541
PP PPP P PP P PPP P PP R
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPP----PPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Query: 540 XXXGPKKXPPXPPXGGGFFXXXKKXPXPPPPXXKKKKXPLXX*XFXPPXKGXXKKXXXPX 361
+ PP P P PPP + P PP + P
Sbjct: 368 SAPSTGRQPP--PLSSS---RAVSNPPAPPPAIPGRSAPAL-----PPLGNASRTSTPPV 417
Query: 360 X--PXKXXFFPPXFXGXPPXXXKXFXXXGPPXPPPKGXXPPPP 238
P PP P PP PP PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 27.1 bits (57), Expect = 5.6
Identities = 21/79 (26%), Positives = 26/79 (32%)
Frame = -2
Query: 475 KKTPXPXPPXXKKKKXPPXXXXXXXPPXRGPXKTXXPPXXXKKXFFPPXXXGXXPXXPKX 296
KK P P PP ++ + P P G + PP P P+
Sbjct: 308 KKRPPPPPPPSRRNRGKP-------PIGNGSSNSSLPPP---------------PPPPRS 345
Query: 295 XXXXGAPXPPPQRXXPPPP 239
P PP R PPPP
Sbjct: 346 NAAGSIPLPPQGRSAPPPP 364
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 528 PKKXPPXPPXGGGFFXXXKKXPXPPPPXXKKKK 430
P PP PP GF + P PPP KK+K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -1
Query: 515 PPXPPXGGAFXXXKKNXPXXPPXXKKKKK 429
PP PP F + P PP KK+K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -3
Query: 711 PPNPPPXXXXPXXXPXXXXFFXXXPPPLXEXPXPPPGGXXXPXP 580
PP PPP P P PPP P P P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVG--VPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/77 (25%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Frame = -2
Query: 466 PXPXPPXXKKK-KXPPXXXXXXXPPXRGPXKTXXPPXXXKKXFFPPXXXGXXPXXPKXXX 290
P PP K PP PP P PP PP P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKP-SVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Query: 289 XXGAPXPPPQRXXPPPP 239
P P P PP P
Sbjct: 1195 SEAPPVPKPSVGVPPVP 1211
Score = 26.2 bits (55), Expect = 9.8
Identities = 35/158 (22%), Positives = 37/158 (23%)
Frame = -3
Query: 711 PPNPPPXXXXPXXXPXXXXFFXXXPPPLXEXPXPPPGGXXXPXPPXXXXXXXXXXXRXXX 532
PP P P P P P + P P P G P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 531 GPKKXPPXPPXGGGFFXXXKKXPXPPPPXXKKKKXPLXX*XFXPPXKGXXKKXXXPXXPX 352
PK PP P P P P P K P P
Sbjct: 1142 VPKPSVAAPPVPA-----PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-PS 1195
Query: 351 KXXFFPPXFXGXPPXXXKXFXXXGPPXPPPKGXXPPPP 238
+ P G PP PP P P PP P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPS---TAPPVPTPSAGLPPVP 1230
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -1
Query: 716 KNPPTPPXXXXXPXXXPXXXNFFXXXPPPXGKXXTPPPGGXKXPXPP 576
K+PP PP P P P G PPP G PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = -3
Query: 630 LXEXPXPPPGGXXXPXPPXXXXXXXXXXXRXXXGPKKXPPXPPXGGGFFXXXKKXPXPPP 451
L + P PPP P P GP PP P G P PPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGA----GPPPPPPPP 782
Query: 450 P 448
P
Sbjct: 783 P 783
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 986 PPPXXXXXXPPPXXXKXXXXXXXKXPPPPP 897
PPP PPP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,946
Number of Sequences: 5004
Number of extensions: 33094
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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