Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_H23.2
(1211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 361 e-100
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 207 2e-54
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 198 1e-51
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 188 2e-48
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 29 1.7
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 2.3
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 4.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 5.2
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 361 bits (887), Expect = e-100
Identities = 173/295 (58%), Positives = 205/295 (69%)
Frame = +3
Query: 144 MREIVHLQAGQCGNQIGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 323
MREIVH+QAGQCGNQ+GA FW I++ HG+D G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 324 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 503
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 504 AVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 683
AVLDVVR+E E CD LQGFQ KIREEYPDR+M T+SV P+PK
Sbjct: 115 AVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174
Query: 684 VSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMS 863
SDTVVEPYNA LS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+
Sbjct: 175 SSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMA 234
Query: 864 GVTTCLRFPDX*TPTCASWRSTWCPSRVXTSSCPGFXPXXXXGXQXYRALTVPXL 1028
GVTT RFP P GF P G ++A++VP L
Sbjct: 235 GVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPEL 289
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 207 bits (506), Expect = 2e-54
Identities = 102/250 (40%), Positives = 149/250 (59%), Gaps = 2/250 (0%)
Frame = +3
Query: 144 MREIVHLQAGQCGNQIGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 320
MRE++ + GQ G QIG WE HGI P G T + ++ + + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58
Query: 321 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 497
E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 498 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 677
+D+VL+ +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 678 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLT 857
P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQV 238
Query: 858 MSGVTTCLRF 887
+S +T LRF
Sbjct: 239 VSSITASLRF 248
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 198 bits (483), Expect = 1e-51
Identities = 106/304 (34%), Positives = 154/304 (50%), Gaps = 2/304 (0%)
Frame = +3
Query: 144 MREIVHLQAGQCGNQIGAKFWEXISEXHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 317
MREI+ + GQ G QIG WE HGI P G + Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 318 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 497
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 498 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 677
VD V D +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
Query: 678 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLT 857
P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++
Sbjct: 175 PQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQV 234
Query: 858 MSGVTTCLRFPDX*TPTCASWRSTWCPSRVXTSSCPGFXPXXXXGXQXYRALTVPXLXXK 1037
+S +T LRF A +++ P + P + + +V + +
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 1038 CSXP 1049
C P
Sbjct: 295 CFEP 298
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 188 bits (457), Expect = 2e-48
Identities = 95/251 (37%), Positives = 142/251 (56%), Gaps = 3/251 (1%)
Frame = +3
Query: 147 REIVHLQAGQCGNQIGAKFWEXISEXHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 326
REI+ LQAGQCGNQIG++FW+ + HGI P G + ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDT---- 58
Query: 327 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSG--AGNNWAKGHYTEGAELV 500
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++G AGNNWA G Y+ +
Sbjct: 59 --RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115
Query: 501 DAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-S 677
+ ++D++ +E + D L+GF ++ + YP +I+ TYSV P S
Sbjct: 116 EDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNS 175
Query: 678 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLT 857
VSD VV+PYN++L++ +L N D +DN AL I L NPT+ N LVS
Sbjct: 176 QSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTV 235
Query: 858 MSGVTTCLRFP 890
MS TT LR+P
Sbjct: 236 MSASTTTLRYP 246
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 465 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 554
A+GH G ELV A D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 663 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 815
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 785 RYLLQDSQGTEPNVRRPEPPGVADHVRRDDVPAVPGQXNADLRKLAV 925
RYL +D++G+E N E P V D + G L KLAV
Sbjct: 66 RYLQEDARGSEINWDLVESPKPEQVVEYDTITEAGGLSRDYLNKLAV 112
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 930 MLTASLRRSAFXCPGTAGTSSRRTWSATPGGSGRRTLG 817
M+ S S+ PG +SS + A PG SG T+G
Sbjct: 776 MMPQSFDTSSLNAPGAKDSSSFSSLHAQPGKSGIATMG 813
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 255 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 368
G+SD+ + +S + EAS + S VP+ +L D +
Sbjct: 49 GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,404
Number of Sequences: 5004
Number of extensions: 61445
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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