Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H23.2
         (1211 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.44 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 716  SSLHPSTSREYRRNLLHRQRGPLRYLLQDSQGTEPNVRRPEPP 844
            SS + S   +   +  +  + P  YLL+DS   +   RR EPP
Sbjct: 956  SSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPP 998


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 777  PRCLCSKFRLYSRLVDGWREL 715
            P  + +K+ LY+R+VDG  EL
Sbjct: 1240 PNGIITKYNLYTRVVDGREEL 1260


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 777  PRCLCSKFRLYSRLVDGWREL 715
            P  + +K+ LY+R+VDG  EL
Sbjct: 1236 PNGIITKYNLYTRVVDGREEL 1256


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 764  HRQRGPLRYLLQDSQGTEPNVRRPEPP 844
            H    P R++ ++     PN R P PP
Sbjct: 1679 HSTWDPRRHMYEELNHCAPNRRCPPPP 1705


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,298
Number of Sequences: 438
Number of extensions: 4722
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41452344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)