Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H22.2
         (1229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.0  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   5.3  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   7.0  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   9.3  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   9.3  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.3  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 346  LPPVLSKECRKEMQYYKLLAKEVEKRISL 432
            LPP++ K   K  +YY+LL+ ++    SL
Sbjct: 1347 LPPLVKKSLGKSKEYYELLSNKLMNSTSL 1375


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 760 ERDYDCN-KINVKRQAIEFEDINNDKTVAKLNFI 858
           +R  DCN +IN + + +  E  N D  VAK+NF+
Sbjct: 137 KRKCDCNDEINERLKKLTEEQQNVDMLVAKVNFL 170


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 550 RLKRSLFCIQFVFPQILGSLAHRSCLR*IPIHF-QLYRAEAMIFAFRL 410
           RL  ++   +F+F +ILG ++   CL  +P+ F Q+ R   + F   L
Sbjct: 147 RLASAIQLKKFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILL 194


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +1

Query: 475 DRTDAPEIPESEEIQTECKITSVLSDEVYEKALKESPKAQPNVCNTINSSVTVLERTKSP 654
           D  +A +I  ++E Q      S+ S    E     SP   PN   + +     L  T S 
Sbjct: 95  DYNEALQIRSADENQQSVPTVSIASPSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSL 154

Query: 655 KFRIDLNLNISGTAKNFLDKDTETI 729
           + R     N+S T+K    K  E +
Sbjct: 155 QQRKITPSNLSNTSKPMDSKQLERL 179


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 344 FYRLSYQKNVAKRCSTTNFWPKKSKSEYHC-FSPI*LKVNRNLAK 475
           FYR   QK  A+  +T +++ K+S+S      SPI    NRN +K
Sbjct: 115 FYRSGSQKR-ARNLTTKDYFAKRSESSSSASVSPISPSANRNDSK 158


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 878 TFLSEPIIKFNLATVLSLLISSNSIA 801
           +FLS P++ F L    SL +SSNS +
Sbjct: 185 SFLSFPLLSFILFPCFSLFLSSNSFS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,964,284
Number of Sequences: 5004
Number of extensions: 78065
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)