Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H22.2
         (1229 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   5.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 944 KLLELREGGPSCAKGQSGNGSSTFLSEPIIK 852
           KL + R+G  +  K +S  GS+T+L E ++K
Sbjct: 436 KLKKPRQGDGAAVKRKSREGSTTYLWEFLLK 466


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 571 LKESPKAQPNVCNTINSSVTVLE 639
           LK  P   PN C  I SSV+  E
Sbjct: 584 LKGIPDPXPNTCKVIASSVSAGE 606


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
 Frame = +1

Query: 619 SSVTVLERTKSPKFRIDLNLNISGTAKNFLDKDTETIRCISEPVELPERDYDCN-KINVK 795
           +SVTV  R  SP+ ++  ++N+    K +LD D  +       ++  E D+  N   +V 
Sbjct: 19  TSVTV--RENSPR-KLANSMNVIHEWK-YLDYDFGSDERRQAAMQSGEYDHTKNYPFDVD 74

Query: 796 R-QAIEFEDINNDKTV-AKLNFI---IGSDKNVEEPFPDWPLA 909
           + + + F  +   K V + LN I   IG+   + +P+PDW  A
Sbjct: 75  QWRGMTFVTVPRYKGVPSSLNVISEKIGNGGRLLQPYPDWSWA 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,371
Number of Sequences: 438
Number of extensions: 5418
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41901987
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)