Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H21.2
         (1259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M...   200   3e-52
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    28   2.4  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    28   2.4  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   9.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   9.5  

>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score =  200 bits (488), Expect = 3e-52
 Identities = 101/221 (45%), Positives = 137/221 (61%)
 Frame = +2

Query: 335 NGIQLQALXNSHVSLV*LTLRADGFXKYRCARXIXXXXXXXXXXXXXXCAGAKDTVTIKA 514
           NGI LQA+ +SHV+LV + +++DGF  YRC R I              CA  +D VT+KA
Sbjct: 33  NGISLQAMDSSHVALVSMLIKSDGFEPYRCDRNIALGINLNALSKVLRCAQNEDLVTLKA 92

Query: 515 QDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLS 694
           +D  + +  VFES   +++SDY++KLM++D EHLGIP+ EY  TI MP++EF RI RDL 
Sbjct: 93  EDTPEVLNLVFESEKNDRISDYDVKLMDIDQEHLGIPDIEYDATITMPAAEFQRITRDLL 152

Query: 695 QFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFXCQYL 874
              +S+ I+ +KEGV+FS  GDIG+ +  L Q   +               TLTF  +YL
Sbjct: 153 TLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFSLKYL 212

Query: 875 NYFTKATSLXPQVQLSMSADVPLVVEYRIPXIGXIRXYLAP 997
             FTKAT L  +V LSMS DVPL+VEY++   G +R YLAP
Sbjct: 213 AQFTKATPLATRVTLSMSNDVPLLVEYKMES-GFLRFYLAP 252


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 881  FTKATSLXPQVQLSMSADVPLVVEYRIPXIGXIRXYLAPXMRKKXXN 1021
            F +   L  Q+Q  + ++VPL  +Y +  +  ++ Y A    KK  N
Sbjct: 195  FEQLEQLEAQIQKKLKSNVPLDTDYWVDLLNSLKSYKAIAYLKKTFN 241


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 872 LNYFTKATSLX-PQVQLSMSADVPLVVEYRIP 964
           LNY T+A S+  P   +S S DVPL  E++IP
Sbjct: 711 LNYHTQAVSIHHPSFYISRS-DVPLEEEFQIP 741


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 602 DLEHLGIP-ETEYSCTIRMPSS 664
           +L  +G+P E EY C  R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 673  SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 542
            ++F  W +      +  NT + + Q+ +LH++++ F+L    KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,020
Number of Sequences: 5004
Number of extensions: 48977
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)