Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H21.2
         (1259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   171   9e-43
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   4.0  
Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical pr...    29   9.2  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  171 bits (416), Expect = 9e-43
 Identities = 86/220 (39%), Positives = 126/220 (57%), Gaps = 1/220 (0%)
 Frame = +2

Query: 341 IQLQALXNSHVSLV*LTLRADGFXKYRCARXIXXXXXXXXXXXXXXCAGAKDTVTIKAQD 520
           + LQA+ +SHV+LV L L    F  YRC R I              CA   DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 521 N-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQ 697
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+    MP+ EF + C+DLS 
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYAVVCEMPAGEFQKTCKDLST 120

Query: 698 FGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFXCQYLN 877
           F +S+ I+ TK G+ F+  GDIGS+ V  + +++ D               + F  +Y+N
Sbjct: 121 FSDSLNITATKAGIVFTGKGDIGSSVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKYMN 180

Query: 878 YFTKATSLXPQVQLSMSADVPLVVEYRIPXIGXIRXYLAP 997
            FTKAT+L  +V+LS+  DVP+VVEY I   G +R YLAP
Sbjct: 181 QFTKATALSDRVRLSLCNDVPVVVEYPIEENGYLRFYLAP 220


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 583 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 491
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical
           protein C15C8.5 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 153 VSGSLSCFACXSVXFXXXLCXAPCXXSXCV 242
           + G+++CF C S       C  PC  S CV
Sbjct: 16  IVGTITCFNCESDFQGALRCQQPCEGSQCV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,368
Number of Sequences: 27780
Number of extensions: 306060
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)