Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H17.2
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    31   0.35 
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   7.5  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 28  LRFPLWTXIICIFESLLLNGLYRLNTIAYYRWLIFFFSFSNF 153
           L F LW   I + +         L+ I Y+ W  FFFSF ++
Sbjct: 233 LAFLLWNGSIVLGDKSHHQASIHLSQINYFLWFFFFFSFPSY 274


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 556 TRQTLPGLNPARSYAPIGRATWSP 627
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,101,395
Number of Sequences: 5004
Number of extensions: 74592
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)