Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H16.2
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...   112   1e-25
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    29   1.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   5.5  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   7.3  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    27   7.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   7.3  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   9.7  

>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score =  112 bits (269), Expect = 1e-25
 Identities = 47/131 (35%), Positives = 90/131 (68%)
 Frame = +2

Query: 500 QDRLDYLCSVGDKETATALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAIN 679
           +++ DY  ++ D+E    L    +E +TLT   ++D +F+  R+AY +  +++ +G+ + 
Sbjct: 116 KNKADYYTNICDRERGVQLCDETFERATLT-GMKIDVLFSKIRLAYVYA-DMRVVGQLLE 173

Query: 680 KAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQY 859
           K   L++KGGDW  +N+LKAY+ IY +++R++S AA+L +DC+STF S EL+ +  +++Y
Sbjct: 174 KLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPYYDVVRY 233

Query: 860 CVLACALALER 892
            V++ A++L+R
Sbjct: 234 AVISGAISLDR 244



 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/85 (22%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
 Frame = +1

Query: 235 LSAEGKTPEYMALAGIKFKLSLPEFKDNIQLK-EQLLNGIKAGHMAPYYKEVCNDLGWA- 408
           ++ + +T   + ++   F+LS P  ++  Q   + L + I+   +AP YK +  +   + 
Sbjct: 13  MTEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSA 72

Query: 409 ---FDQKLYDDMTKENQDRLSKFEE 474
              FD    + M K+N+++L++F++
Sbjct: 73  SIDFDSNFLNSMIKKNEEKLAEFDK 97


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +1

Query: 217 NQLKMELSAEGKTPEYMALAG-IKFKLSLPEFKDNIQL---KEQLLNGIKAGHMAPYYKE 384
           N LK +   E    E   + G ++ K  L    +N++    K + L   +A   A   KE
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKE 174

Query: 385 VCNDLGWAFDQKLYDDMTKENQDRLSK 465
            C +  W   QKLY DM +EN   + K
Sbjct: 175 EC-EKSWLEQQKLYKDMEQENASTIQK 200


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 RREKHLNTWHWPESNLNSVYL 304
           R E   +TW WP  N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +2

Query: 641 HGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTF 817
           H C V ++     K  ELV K   W++  +++   A  C   +D++    +++     F
Sbjct: 76  HSCGVNDVTDLGGKDDELVGKRKKWKTEVRIETSMA-ECNGGKDFTEMTRIYLSIRKNF 133


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 659 EMGKAINKAHELVDKGGDWRSRNKLKAYEAIY 754
           +  K I K HE +  GGDWR  + L A  + Y
Sbjct: 269 DASKRIFKEHESMCYGGDWRHTDGLLATCSFY 300


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 752 YCLAVRDYSHAAELFIDCVSTFESYE 829
           Y LA +  S AA L+  CV  FES E
Sbjct: 204 YSLAAKIASSAATLYDSCVHAFESME 229


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 735 KHMKLYIALLLEITVMQLNYSLTVCQLLNLMNWLISVQSSSTVFSLVP 878
           KH  +++   L + +  L +SLT   LL L++  +   S    + L+P
Sbjct: 53  KHQSVFLKFSLIVLLFSLMFSLTFGSLLGLISLALGFPSVGYRYVLLP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,986,455
Number of Sequences: 5004
Number of extensions: 75445
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)