Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H16.2
         (1275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...   115   8e-26
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    29   7.0  
AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    29   7.0  

>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score =  115 bits (276), Expect = 8e-26
 Identities = 54/138 (39%), Positives = 89/138 (64%)
 Frame = +2

Query: 506 RLDYLCSVGDKETATALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKA 685
           + +Y C +GDK+ A    T+ YE  T+    R+D +FA+ R+  F   +   + K I KA
Sbjct: 121 KFEYYCQIGDKDNALKAYTATYE-KTVGMGYRIDVVFAMIRVGLFF-LDHHLINKFITKA 178

Query: 686 HELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCV 865
            EL+++GGDW  +N+L++YEA+Y ++VRD++ AA+LF++ V TF SYEL+ +  +I Y V
Sbjct: 179 KELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPTFGSYELMTYENLILYTV 238

Query: 866 LACALALERHALQSALRR 919
           +    AL+R  L++ + R
Sbjct: 239 ITTTFALDRPDLRTKVIR 256



 Score = 33.5 bits (73), Expect = 0.33
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 265 MALAGIKFKLSLPEFKDNIQLK--EQLLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMT 438
           + L+  +F L+ PE   +++    E+L   IK   MAP+Y+ VC D     D      M 
Sbjct: 29  LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMK 88

Query: 439 KENQDRLSKF--EEDDSE 486
             NQ ++ +   E +D+E
Sbjct: 89  AANQKKIDEITAEVEDAE 106


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 222 LIVMLLFINVIKVCLEVNFQQIISLLTEQTKNKIKMHSTSAR*NXKSXGTXXXG 61
           L V+ + INVI++ LE  F QI+  +    KN + + +  +R   KS G    G
Sbjct: 289 LSVVSMCINVIQMQLEFIFNQIVQRIENDFKNTLSVAAEESR--KKSIGVSEFG 340


>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 752 YCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQ 922
           YC  V   S    + +  +  F+SY++V+F    QY +LA  ++   + LQ  +  Q
Sbjct: 14  YCYIVGAVSFVLNVLVILIIIFKSYKIVEF----QYMLLAFQISCTNYVLQLTILSQ 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,211,914
Number of Sequences: 27780
Number of extensions: 420511
Number of successful extensions: 1101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)