Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H15.2
         (1294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    32   1.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    32   1.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    32   1.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 1193 PPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            PP   PP   PP      P    A GS  P RTG P
Sbjct: 237  PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 272



 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/44 (40%), Positives = 18/44 (40%)
 Frame = -3

Query: 1217 PXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P   G  PPP   PP   PP     PP  G   GS  P  TG P
Sbjct: 291  PPRAGSPPPPP--PPRGSPPTGSLPPPQAG---GSPPPAGTGSP 329



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -3

Query: 1226 PXXPXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P  P   G  PPP    P   PP     PP  G   GS  P R G P
Sbjct: 255  PPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAG---GSPPPPRAGSP 297


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 1193 PPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            PP   PP   PP      P    A GS  P RTG P
Sbjct: 258  PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 293



 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/44 (40%), Positives = 18/44 (40%)
 Frame = -3

Query: 1217 PXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P   G  PPP   PP   PP     PP  G   GS  P  TG P
Sbjct: 312  PPRAGSPPPPP--PPRGSPPTGSLPPPQAG---GSPPPAGTGSP 350



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -3

Query: 1226 PXXPXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P  P   G  PPP    P   PP     PP  G   GS  P R G P
Sbjct: 276  PPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAG---GSPPPPRAGSP 318


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 1193 PPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            PP   PP   PP      P    A GS  P RTG P
Sbjct: 243  PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP 278



 Score = 31.1 bits (67), Expect = 1.8
 Identities = 18/44 (40%), Positives = 18/44 (40%)
 Frame = -3

Query: 1217 PXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P   G  PPP   PP   PP     PP  G   GS  P  TG P
Sbjct: 297  PPRAGSPPPPP--PPRGSPPTGSLPPPQAG---GSPPPAGTGSP 335



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -3

Query: 1226 PXXPXXXGXXPPPXXXPPXXXPPXXXXXPPXXGXAXGSVXPGRTGXP 1086
            P  P   G  PPP    P   PP     PP  G   GS  P R G P
Sbjct: 261  PPPPPAAGSPPPPRTGSP-PPPPTGSPPPPPAG---GSPPPPRAGSP 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,195
Number of Sequences: 27780
Number of extensions: 224165
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)