Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H10.2
         (1238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   281   1e-76
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    32   0.19 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   9.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   9.4  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  281 bits (689), Expect = 1e-76
 Identities = 140/211 (66%), Positives = 167/211 (79%), Gaps = 1/211 (0%)
 Frame = +3

Query: 186 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 365
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP  LD+ K
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEK 61

Query: 366 ELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQF 545
           +L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK FMEA  +GADISMIGQF
Sbjct: 62  DLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQF 121

Query: 546 GVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKED 722
           GVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+  P L RGT+I L +KED
Sbjct: 122 GVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKED 181

Query: 723 LAEFMXXXXXXXXXXXXSQFIGYPIKLMVEK 815
             +++            S+FI YPI+L+V +
Sbjct: 182 QLQYLEEKTIKDTVKKHSEFISYPIQLVVTR 212


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +3

Query: 213  AEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIKIIPN 392
            AEI  L         +N +   R++++N    L KI      DPSK     ++Y K+   
Sbjct: 2433 AEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKPKIYSKVSTE 2489

Query: 393  KNEGTLTIIDTGIGMTKADLVNNLG 467
            + +  L   D+GI ++   L+  +G
Sbjct: 2490 ERDFNLEQFDSGIDLSVKFLLEGIG 2514



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 243 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 380
           +N   S +EI L++ I   +   D I+Y S    S ++    +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -2

Query: 496 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 338
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 395 LVGNDLDVQLFATIEF*RIRERFIPDFV*SVR*IGNQLTKENFFV 261
           LV + LDV  F   +  ++   F+ D+  SVR   N+  K NFF+
Sbjct: 295 LVISMLDVDGFRIDKATQMTVDFLVDWAKSVRLCANRFNKSNFFI 339


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 473 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 366
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,929
Number of Sequences: 5004
Number of extensions: 76426
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)