Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_H09.2
(1279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 111 3e-25
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 42 2e-04
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 41 3e-04
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 29 1.8
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 29 1.8
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 28 2.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 3.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 5.6
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 9.7
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 111 bits (266), Expect = 3e-25
Identities = 54/143 (37%), Positives = 77/143 (53%)
Frame = +2
Query: 245 PCPWRXLDXSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 424
PCP+ L+ ++HSIKG+RN+P G K + ++AA K R+P++GGNF
Sbjct: 10 PCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPG--EKRISAIAAAKTRAPVLGGNFG 67
Query: 425 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGVPXXXXXXXXXXXXXXXXX 604
VWGG+FST DC++ +R+KEDPWN+I++G TGG LA R G
Sbjct: 68 VWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAVFE 127
Query: 605 XXXXMFTRLTAEQFKPQQPIFED 673
R+ AE +P P+ D
Sbjct: 128 GLGIALGRMNAEYNRPVAPVIPD 150
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 362 KMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAAR 541
++ G L V R P VG + V +++ I+ + Y RQK NS+ +GALTG + +
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKST 178
Query: 542 NGV 550
G+
Sbjct: 179 RGL 181
>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 395 RSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 547
RS NF + G ++S +C + R K D +N+I +G TGG LA R+G
Sbjct: 99 RSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSG 149
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 449 W*RTYHPKQQNYPRLLESAPLLQPNCQAFF 360
W TY K +NYP L+ PLL + +F
Sbjct: 211 WNATYATKSENYPNLVLPGPLLVTSMLEYF 240
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 486 IHGIPL*VEPSRGVSWLQEMVYRQWQEVHLLEEFS 590
I I + +PSRG +W Q ++ Q +E+HL E S
Sbjct: 259 IDEIQMMADPSRGYAWTQCLLGLQAKEIHLCGEES 293
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -2
Query: 465 TSEQSMVENIPPQTAKLPPTIGERSFTAAKLPSIFLLKPSGAF 337
+ E ++ + PP TAK P ++ E + + AKLP++ L+ SG F
Sbjct: 169 SQEYTLDKLSPPSTAKPPASVIEFNPSLAKLPTVKYLQ-SGPF 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 615 IPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAP 508
+P PS+ +PP S P + P +A +PPV P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPV---PTPSAGLPPVPVP 1232
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 589 ENSSNKCTSCHCRYTISCSQDTPRE--GSTHNGIPWIFLLPHVH 464
+N K HC + C ++ P E GS H P +F++PH H
Sbjct: 133 KNCLQKWLENHCTCPL-CRKEVPHETVGSAHP--PILFIIPHSH 173
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 452 LW*RTYHPKQQNYPRLLESAP 390
+W + PK NYP LLES+P
Sbjct: 908 IWDQRLLPKIVNYPPLLESSP 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,316,730
Number of Sequences: 5004
Number of extensions: 87902
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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