Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_H09.2
(1279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 111 2e-24
03_04_0070 + 17042509-17043129 101 9e-22
03_04_0073 + 17059358-17059921 39 0.007
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 33 0.48
01_06_1476 + 37640278-37642551 31 1.9
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926... 30 3.4
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 30 3.4
07_01_0310 + 2209084-2209554 30 3.4
12_01_0231 + 1744323-1745276,1745516-1746193 30 4.5
11_01_0234 + 1804581-1805357,1805941-1806447 30 4.5
07_01_0422 + 3220988-3221536 30 4.5
07_01_0312 + 2214050-2214556 30 4.5
03_04_0072 + 17054137-17054499 29 5.9
01_03_0204 + 13771346-13772680 29 5.9
11_01_0233 + 1801011-1802081 29 7.9
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 111 bits (266), Expect = 2e-24
Identities = 51/101 (50%), Positives = 66/101 (65%)
Frame = +2
Query: 245 PCPWRXLDXSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 424
PCP R LD LFH +KG N+P G +++G AV+ +P VGG+FA
Sbjct: 10 PCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRVGGSFA 67
Query: 425 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 547
VWGG+FS DC++V+MRQKEDPWNSI++GA TGG L+ R G
Sbjct: 68 VWGGLFSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQG 108
Score = 103 bits (247), Expect = 3e-22
Identities = 50/102 (49%), Positives = 63/102 (61%)
Frame = +2
Query: 245 PCPWRXLDXSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFA 424
PCP R LD FH +KG RN+P G + G + V+ +P V G FA
Sbjct: 234 PCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGGFA 291
Query: 425 VWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNGV 550
VW G+FS DC+LV +RQKEDP+NSI++GA TGGILAAR G+
Sbjct: 292 VWCGLFSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGL 333
>03_04_0070 + 17042509-17043129
Length = 206
Score = 101 bits (243), Expect = 9e-22
Identities = 48/108 (44%), Positives = 62/108 (57%)
Frame = +2
Query: 224 MDASXSAPCPWRXLDXSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 403
M S PCP R LD FH ++G N+P G ++ G AV+ P
Sbjct: 1 MTTSEREPCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG--HRLSGGSQAVRMSVP 58
Query: 404 IVGGNFAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTGGILAARNG 547
GGNFA WGG+FS DC++V+ RQKEDPWNSI++GA TG +L+ R G
Sbjct: 59 RTGGNFAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQG 106
>03_04_0073 + 17059358-17059921
Length = 187
Score = 39.1 bits (87), Expect = 0.007
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +2
Query: 224 MDASXSAPCPWRXLDXSXXXXXXXXXXXXLFHSIKGFRNAPLGFSRKMLGSLAAVKERSP 403
M+ P P LD + L H G R+ P G R + G+ AV++ +P
Sbjct: 1 MEEEWGVPYPDCVLDNAGAGFVGGAAAGTLAHLFTGLRDFPCG--RHLAGAAQAVRDGAP 58
Query: 404 IVGGNFAVWGGMFSTIDCSLVYMRQK-EDPWNSIMSGALTGGILAARNG 547
+ +A ++S +L + +DP S+ +GA TG + R+G
Sbjct: 59 CLATRWAARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVARLRHG 107
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 33.1 bits (72), Expect = 0.48
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = -2
Query: 609 MPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPP 430
+P + R P + LP+++G P + +PP+ P+ M+ GSS +M Q ++
Sbjct: 558 LPHAQGSRAP-LPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLIG--MN 614
Query: 429 QTAKLPPT 406
QT + PP+
Sbjct: 615 QTHQGPPS 622
>01_06_1476 + 37640278-37642551
Length = 757
Score = 31.1 bits (67), Expect = 1.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 541 SCSQDTPREGSTHNGIPWI 485
S D PR G+ HNGIPW+
Sbjct: 320 SAGNDGPRLGTLHNGIPWL 338
>12_02_0523 +
19988949-19989234,19992420-19992484,19992570-19992642,
19992765-19992818,19993532-19993761
Length = 235
Score = 30.3 bits (65), Expect = 3.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 419 FAVWGGMFSTIDCSLVYMRQKEDPWNSIMSGALTG 523
FAV G+ S + C+L +R K+D N+ ++G TG
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTG 153
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -2
Query: 528 IPPVRA-PLIMEFHGSSFC 475
IPPVR P+++ FHG SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>07_01_0310 + 2209084-2209554
Length = 156
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 645 NCSAVNLVNMIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 511
+C A L+ P++ A +PP+ A+PAI AA +PP+ A
Sbjct: 10 SCQAARLLADATPPAVPAVTLPPMPAIPAIP-----AATLPPIPA 49
Score = 30.3 bits (65), Expect = 3.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 612 PMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 511
PMP++ +PP+ A+PA+ P A +PP+ A
Sbjct: 60 PMPAVPKVALPPMPAVPAVPTVP--AVALPPMPA 91
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 29.9 bits (64), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 543 FLAARIPPVRAPLIMEFHGSSFCLMYTS 460
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTTPAGRRPVLVHFHGGGFCLSHAA 110
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 29.9 bits (64), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 543 FLAARIPPVRAPLIMEFHGSSFCLMYTS 460
+L P R P+++ FHG FCL + +
Sbjct: 83 YLTTTAPARRRPVLVHFHGGGFCLSHAA 110
>07_01_0422 + 3220988-3221536
Length = 182
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 320 SIKGFRNAPLGFSRKMLGSLAAVKERSPIVGGNFAVWGGMFSTIDCSLVYMRQKEDPW 493
+++ F G +RK G AA + P+ N+ + + DC ++ R+ DPW
Sbjct: 90 TLEAFPEVVYGEARKARGGAAATQTCCPVCLENYGDGDVLRALPDCGHLFHRECVDPW 147
>07_01_0312 + 2214050-2214556
Length = 168
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = -2
Query: 612 PMPSIRAKRIPPISALPAIAGTPFL----AARIPPVRA 511
PMP++ +PP+ A+PA+ P + AA +PP+ A
Sbjct: 80 PMPAVPKVALPPMPAVPAVPTVPAVPAVPAASLPPMPA 117
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 615 IPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRA 511
+P+P++ A +PP+ A+PA+ AA +PP+ A
Sbjct: 40 VPVPTVPAVTLPPMPAIPAVP-----AATLPPMPA 69
>03_04_0072 + 17054137-17054499
Length = 120
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 479 KEDPWNSIMSGALTGGILAARNG 547
KE+ WN + +GA T G L R G
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQG 30
>01_03_0204 + 13771346-13772680
Length = 444
Score = 29.5 bits (63), Expect = 5.9
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = -2
Query: 642 CSAVNLVNMIPMPSIRAKRIPPISALPAIAGTPFLAARIPPVRAPLIMEFHGSSF 478
CS+ ++ PS IP LP A T LA I P PLI + SSF
Sbjct: 131 CSSTKRCRLVDQPS--TSHIPHQHLLPQFAPTYTLAIPITPSLMPLISQCTPSSF 183
>11_01_0233 + 1801011-1802081
Length = 356
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 546 PFLAARIPPVRAPLIMEFHGSSFCLMYTSEQSMVENIPPQTAKL 415
P AA P R PL++ HG FCL S P AKL
Sbjct: 78 PPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALYHNFYAPLAAKL 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,205,462
Number of Sequences: 37544
Number of extensions: 582160
Number of successful extensions: 1318
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3969121332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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