Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H09.2
         (1279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   10.0 

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = -2

Query: 648 LNCSAVNLVNMIP--MPSIRAKRIP-PISALPAIAGTPFLAA---RIPPV-RAPLIMEFH 490
           L C  +N V ++   +PS   +++   ISAL  ++ T FL      +PP  + PLI  ++
Sbjct: 222 LPCILINSVALLVFYVPSESGEKVTLGISAL--LSMTVFLMTIRESLPPTEKTPLISLYY 279

Query: 489 GSSFCLM 469
           G S CL+
Sbjct: 280 GVSICLV 286


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 565 KCTYWRNSLSSNRGHWYHVHKI 630
           +  YWR  +  N  HW H H +
Sbjct: 195 RVAYWREDIGINLHHW-HWHLV 215


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 493 EFHYEWSPHGGYPGCKKWCTGNG 561
           E H EW  +   PG  KW   +G
Sbjct: 558 ENHIEWFDYAFIPGNLKWLDIHG 580


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,392
Number of Sequences: 438
Number of extensions: 6656
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)