Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H07.2
         (1308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    29   1.1  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    29   1.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   2.5  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   7.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   10.0 
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    26   10.0 

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 247 VDPNEVFLFFRLSNTYPGKVLLQQRLRVGY 158
           VDP   F FF +SN + G V+  +RL++G+
Sbjct: 365 VDPVSAFRFFEMSNIH-GLVIRNRRLKIGW 393


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 711 WPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIEKKI 872
           WP    ++  + KT L W  E   L  + + +GG   Q Y  + SA +E  KK+
Sbjct: 195 WPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYV-IPSAHSESFKKL 247


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 222 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 359
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 721 PVGQKR-QALAACRKRSPSLNRKWSSMSCCWVSFDMPVRG 605
           P G+KR  A+AA + R+P L   +      + +FD  V+G
Sbjct: 43  PPGEKRISAIAAAKTRAPVLGGNFGVWGGLFSTFDCAVKG 82


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 813  DLQQVYKRLVSAVNEIEKKIPFSHHXR 893
            D+QQ+ + +V+A N  E+K+  +HH R
Sbjct: 2198 DIQQLERSIVNASNMKEEKMLKNHHSR 2224


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 319 SASGA*IPTPESKFSTPDWIQSRRVDPNEVFLFFRLSNTYPGKVLLQQRLRVGYPGA 149
           SASG   P PES+ STP      R   N+  +   +S      + L+  L + YP +
Sbjct: 120 SASGLTSPIPESRPSTPMDNHQERDRSNDFQVTAHVSYDGDANLSLEAVLSMNYPNS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,371
Number of Sequences: 5004
Number of extensions: 61936
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)