Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_H07.2
(1308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0040 + 11816056-11819069,11819837-11820428 33 0.50
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.50
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 32 1.1
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826 31 2.0
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 30 4.6
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 29 6.1
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 6.1
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 29 8.1
11_06_0142 - 20564572-20565951 29 8.1
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 33.1 bits (72), Expect = 0.50
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 512 PLPHRVPVQGD-GGQGLRHPVQPRGRAQGHVLPPHRHV--EGDPAAAHRRPLP 661
P P PV GD G +G+ V +G A+G + P R V G P AA P P
Sbjct: 49 PPPPTAPVAGDDGSKGVEGVVANQGGAEGVAVSPDRSVPLSGGPTAASSLPPP 101
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.50
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 243 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 383
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -3
Query: 634 WVSFDMP----VRG*NVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRV 467
W SFD P V G ++ + + P + +Y ++ G+ GY S PQ
Sbjct: 170 WQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYN 229
Query: 466 ETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 377
++ R+P+ T F GC S+F++
Sbjct: 230 YVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
Length = 196
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 178 AEXVPYQGKYSTA*RTRRPHSDPPSLTVSNRVSRTWTPAS-VSTRRTPSRTPCSPSCL 348
AE QGK RT S PP TVS + WT S+ T S P SPS L
Sbjct: 38 AEAWHAQGKSVILVRTGIGLSVPPGFTVSTEACQQWTHVDHTSSSLTSSLYPLSPSSL 95
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 29.9 bits (64), Expect = 4.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Frame = +2
Query: 542 DGGQGLRHPVQPRGR------AQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLP 685
DGG+ R PVQ G A V PPH P H +P P +G P
Sbjct: 67 DGGRTDRDPVQLAGLFAPVFGAAAGVQPPHLRAPPPPQVFHAQPKPGEGAMAAP 120
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 29.5 bits (63), Expect = 6.1
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +2
Query: 485 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPV 664
P A G+P P + Q Q + P + RG G P H+ P A P P
Sbjct: 28 PPANGLPSTPPRQQAQAQA---QQVGTP-RRRGSKSGSTTPGHQ----TPGVAWPSPYPS 79
Query: 665 QGGRPLPAG 691
G PLPAG
Sbjct: 80 GGASPLPAG 88
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 512 PLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDPAAAHRRPLPVQ 667
P P P G+RHPV R + HV PP P+++ R+ P Q
Sbjct: 48 PAPAPAPAPETHRPGIRHPVPRHHRKRPHVAPP----LPPPSSSERQVAPYQ 95
>12_01_1055 - 10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 29.1 bits (62), Expect = 8.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 902 PHVLXDKLGHXGPXLRAHQAAEAGGXKKXWRXWXQVHLXVXXARXQXS 1045
P V +G G RA + A A G K W+ + ++HL V R S
Sbjct: 99 PAVAARVIGEGGALRRAREEAAAAG--KQWKPFGEIHLKVSSIRASKS 144
>11_06_0142 - 20564572-20565951
Length = 459
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 247 PSLTVSNRVSRTWTPASVSTRRTPSRTPCSPSCL 348
P L S V R+W A + RR R+P P CL
Sbjct: 31 PDLVHSGAVCRSWHSAFATFRRLGLRSPPHPPCL 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,990,073
Number of Sequences: 37544
Number of extensions: 513207
Number of successful extensions: 2001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4085517852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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