Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H06.2
         (1296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    31   0.46 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    29   1.9  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    28   2.4  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    28   3.2  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   9.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   9.9  
SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   9.9  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +1

Query: 553 LHSCPLTKFMHHPKNENDE-HKEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDD 729
           L +   T   H  K E+ E H E+ +TK  I + +     KK+   ++   +    + DD
Sbjct: 185 LENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDD 244

Query: 730 KM--DTSNDGLENVKLEPMDPEDGKVATKLPLKERIRQK 840
           K    TS D     + +  D +D K+  K P+K  +  K
Sbjct: 245 KAKGSTSKDQPSEEEEKTSDIQDRKI--KTPIKPSLLGK 281


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
 Frame = +1

Query: 592 KNENDEHKEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDD--KMDTSNDGLENV 765
           K + DE  + +K +  +  I   N++++ S    E        +DD  ++D  ++ L ++
Sbjct: 425 KLDLDEDFDPEKWESKMSEIFNENYYEEDSAKKPE--FGDDIDIDDIAQVDNGSEDLGSI 482

Query: 766 KLEPMDPEDGKVATKLPLKERIRQKKFIIDDIV 864
           + + ++    +  +K  L++ IR+KK  ID+ V
Sbjct: 483 ENKTVEDTGNREKSKKSLRKDIREKKRKIDEYV 515


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +1

Query: 619 QQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETL--DDKMDTSNDGLENVKL-EPMDPE 789
           QQ T+  ++ +   NFFK+ S         S  +L    K+ +S   +EN  L  PMDP 
Sbjct: 196 QQLTELIVYEL---NFFKE-STGILNTIFNSQNSLTPQKKIQSSERSVENEFLASPMDPS 251

Query: 790 DGKVATKLPLKERIRQKKF 846
             K+ TK    E+I    F
Sbjct: 252 LSKLFTKTTNTEKISPTPF 270


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 585 MHKFSQRTRMQEFQMMTFWFRSFI 514
           M+KFS RTR Q+  MM   FR  +
Sbjct: 106 MNKFSFRTRRQDLHMMDLRFREIV 129


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 442 FFTXSSEKSKDEXAIQKXTDICKXDETSKPKGHH--LKFLHSCPLTKFMHHP 591
           F T    + K++  + +   + K   +SKPK  H  LK   S  L K   HP
Sbjct: 32  FGTVYLAQRKEKNGLYETVAVKKLKNSSKPKPKHELLKLRESLALRKISKHP 83


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 628 TKRSIFNIRYPNFFKKRSPSTAEATLASMETLDDKMDTSN 747
           T  S  N+ Y N     SPS +  T  + ET++D++D+ N
Sbjct: 272 TPTSTENVNY-NMTTPSSPSYSRQTGPASETINDEIDSPN 310


>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 592 KNENDEHKEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDDK 732
           KN+ D+ KE  K +  + N + PN       +++  ++ + ET++ +
Sbjct: 117 KNQKDKKKEVNKLEEKMTNAKEPNVNVPSMKASSAISVETPETIESE 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,618
Number of Sequences: 5004
Number of extensions: 64883
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)