Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H06.2
         (1296 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017240-1|AAH17240.1|  693|Homo sapiens MAP1B protein protein.        34   1.3  
L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated pr...    32   4.0  
AY545070-1|AAS48630.1|  286|Homo sapiens unknown protein.              32   5.2  

>BC017240-1|AAH17240.1|  693|Homo sapiens MAP1B protein protein.
          Length = 693

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +1

Query: 349 PVKAALSGAVTEQGREVKPKXIPIGAIKMPGFFTXSSEKSKDEXAIQKXTDI---CKXDE 519
           PVK     +VTE+    K +  P+ A       T    K+  E  ++K T +    K +E
Sbjct: 593 PVKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEE 652

Query: 520 TSKPKGHHLKFLHSCPLTKFMHHPKNENDEHKEQQKTKR 636
             KPK    K     P+ K    PK +  + K+++K K+
Sbjct: 653 KEKPKKEVAKKEDKTPIKK-EEKPKKKKKKKKKKKKKKK 690


>L06237-1|AAA18904.1| 2468|Homo sapiens microtubule-associated protein
            1B protein.
          Length = 2468

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 3/162 (1%)
 Frame = +1

Query: 349  PVKAALSGAVTEQGREVKPKXIPIGAIKMPGFFTXSSEKSKDEXAIQKXTDI---CKXDE 519
            PVK     +VTE+    K +  P+ A       T    K+  E  ++K T +    K +E
Sbjct: 593  PVKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEE 652

Query: 520  TSKPKGHHLKFLHSCPLTKFMHHPKNENDEHKEQQKTKRSIFNIRYPNFFKKRSPSTAEA 699
              KPK    K     P+ K    PK E  + + +++ K+           K+  P   + 
Sbjct: 653  KEKPKKEVAKKEDKTPIKK-EEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKK 711

Query: 700  TLASMETLDDKMDTSNDGLENVKLEPMDPEDGKVATKLPLKE 825
             +   E  + K +      E  KL    P+D K  +  PL E
Sbjct: 712  EVKKEEKKEVKKEEKEPKKEIKKL----PKDAK-KSSTPLSE 748


>AY545070-1|AAS48630.1|  286|Homo sapiens unknown protein.
          Length = 286

 Score = 31.9 bits (69), Expect = 5.2
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +1

Query: 607 EHKEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDDKMD 738
           +H+E + TKR+I ++R P+   +RS S ++A L+   TL+  ++
Sbjct: 213 KHRELRVTKRNILDVRPPS-GPRRSQSASDAPLSQQHTLETLLE 255


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,138,352
Number of Sequences: 237096
Number of extensions: 2320245
Number of successful extensions: 5042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5024
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18660671970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)