Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H06.2
         (1296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50310-6|AAA92542.1|  212|Caenorhabditis elegans Ground-like (gr...    31   2.3  
Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical pr...    30   4.1  
AF016425-7|AAB65335.1|  116|Caenorhabditis elegans Hypothetical ...    29   7.2  
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    29   9.5  

>U50310-6|AAA92542.1|  212|Caenorhabditis elegans Ground-like (grd
           related) protein 8 protein.
          Length = 212

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 568 LTKFMHH---PKNENDEHKEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDDKMD 738
           +T   HH   PK E+D  +EQ K  R+   +   N    +   T E  + S +  DDK++
Sbjct: 53  VTSSAHHLLRPKTESDSEEEQPKPTRNRVRLHSHNSKVSKVSRTREVEVLSEKCNDDKLE 112


>Z96102-2|CAI79216.1|  746|Caenorhabditis elegans Hypothetical
           protein H39E23.3 protein.
          Length = 746

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 457 SEKSKDEXAIQKXTDICKXDETSKPKGHHLKFLHSCPLTKFMHHPKNENDEHKEQQKTKR 636
           ++K K E A  +     K  E+ KPK          P+ +    PK E+ + +++  TKR
Sbjct: 291 ADKPKTESADSEKKAPAKR-ESDKPKTESADSEKKAPVKREADKPKTESADSEKKAPTKR 349

Query: 637 SIFNIRYPNF-FKKRSPSTAEATLASMETLD-DKMDTSNDGLENVKLEPMDPE 789
                +  +   +K++P+  EA     E+ D +K  ++    +  K E  D E
Sbjct: 350 EADPPKTESADSEKKAPAKREADKPKTESADSEKKASAKREADKPKTESADSE 402



 Score = 29.5 bits (63), Expect = 5.4
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 2/144 (1%)
 Frame = +1

Query: 385 QGREVKPKXIPIGAIKMPGFFTXSSEKSKDEXAIQKXTDICKXDETSKPKGHHLKFLHSC 564
           + RE +P  +P    +        ++  K E A  +     K  E+ KPK        + 
Sbjct: 27  EARETEPVKLPTADSEKKAPTKREADPPKTESADSEKKAPTKR-ESDKPKTESADSEKNA 85

Query: 565 PLTKFMHHPKNENDEHKEQQKTKRSIFNIRYPNF-FKKRSPSTAEATLASMETLD-DKMD 738
           P  +    PK E+ + +++   KR     +  +   +K++P+  EA     E+ D +K  
Sbjct: 86  PAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKA 145

Query: 739 TSNDGLENVKLEPMDPEDGKVATK 810
            +    +  K E  D E    A +
Sbjct: 146 PAKRESDKPKTESADSEKNAPAKR 169


>AF016425-7|AAB65335.1|  116|Caenorhabditis elegans Hypothetical
           protein F59A7.2 protein.
          Length = 116

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 535 GHHLKFLHSCPLTKFMHHPKNENDEH--KEQQKTKRSIFNIRYPNFFKKRSPSTAEATLA 708
           GHH   L  CPL    H  +N   EH  + + +T+R + N    N  +    S   A  +
Sbjct: 21  GHHTDHLEGCPL-NLTHLHENMTMEHPPRNETRTRRGLDN-DIENAGESAVNSVENAGKS 78

Query: 709 SMETLDDKMDTSNDGLEN 762
           + ET  +  D+    +EN
Sbjct: 79  AWETAGELGDSGVHTVEN 96


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 613 KEQQKTKRSIFNIRYPNFFKKRSPSTAEATLASMETLDDKMDTSNDGLENVKLEPM-DPE 789
           +E++  ++S+F    PN  ++ S    E    S  + D    + N   +++KLEP+ D +
Sbjct: 128 RERRSDEQSVF----PNEMEEESSMDNEFDANSENSNDMAQSSPNVNSQDIKLEPISDYD 183

Query: 790 DGKVATKLPLKE 825
           D  + TK  L++
Sbjct: 184 DAPIETKPSLED 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,781,496
Number of Sequences: 27780
Number of extensions: 372873
Number of successful extensions: 1219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)