Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H03.2
         (1303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    31   0.26 
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    27   7.5  

>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +1

Query: 769 TAPTSYLDAGHAHAVTRGPRTQSCLFQLRRIARTH---YQVVPRRFNLSDGGDDDACEDX 939
           TAP+    + H+ A +R   TQS  F+ R  + TH     +V RR + S+  D+D+ E+ 
Sbjct: 158 TAPSIMGMSIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRRSSSSESSDEDSAEEG 217

Query: 940 SRGTVAT 960
            +  V T
Sbjct: 218 MKRLVIT 224


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 773 PRPPTLTPGTHTQSQEGRELNLACSSSGGSPEPTIKWYRDG 895
           PRP T+   T+T   + REL  A  + G + EP  KW + G
Sbjct: 262 PRPVTIR--TNTLKTQRRELAQALINRGVNLEPIGKWSKVG 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,318,080
Number of Sequences: 5004
Number of extensions: 87206
Number of successful extensions: 211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)