Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H03.2
         (1303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    31   2.0  
06_03_1336 - 29424470-29424897,29425243-29429653                       30   4.6  
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    30   4.6  
01_07_0357 + 43032552-43033034,43034054-43034383,43035210-430353...    30   4.6  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   8.0  

>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +2

Query: 704 RVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHTQSQEGRELNLACSSSGGSPEPTIKW 883
           R K G S    +S G A T    P     TP THT         L    +GGS +P + +
Sbjct: 479 RKKPGSSSGRANSSGTANTAGPSPSSAPSTPSTHTPGDAMSMPQL--QQNGGSAKPLVMF 536

Query: 884 YRDGS 898
             DG+
Sbjct: 537 GSDGA 541


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 814 TRGPRTQSCLFQLRRIARTHYQVVPRR--FNLSD--GGDDDACEDXSRGTVATLSLNT 975
           TR P  +  L QLR +A     V+     F + D   G D+A ++ +RG +  L LNT
Sbjct: 60  TRSPALKQLLLQLRGLAYDAEDVLDELDYFRIQDELDGTDEAADEHTRGCLHGLLLNT 117


>02_04_0611 +
           24347384-24350015,24350126-24350497,24350561-24350805,
           24350997-24351059,24351919-24352422
          Length = 1271

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 428 TVGWLVRADDEQHDAREGDNVTMQCRFSLEPLAGEPLTYYWVRSTA-SGHENVAIGNIPL 604
           T+ W+ +  + Q      +N T    +S+  L    LT  ++R+ A  GH   ++GN  L
Sbjct: 414 TIEWIGKLKNLQSLCLRNNNFTGPIPYSIGKLT--QLTELYLRNNAFEGHIPPSLGNPQL 471

Query: 605 ETNYQITYAPTEGRFDLLVSNV 670
                ++Y   +G   L +SN+
Sbjct: 472 LLKLDLSYNKLQGTIPLEISNL 493


>01_07_0357 +
           43032552-43033034,43034054-43034383,43035210-43035325,
           43035589-43035679,43035790-43035860,43036202-43036258,
           43036809-43036860,43037139-43037170,43037686-43037753,
           43038148-43038353
          Length = 501

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 773 PRPPTLTPGTHTQSQEGRELNLACSSSGGSPEPT 874
           PRP TL P  + + +    L +  +S+ G P PT
Sbjct: 19  PRPTTLAPTPNPRPRRRNSLAICSASASGDPSPT 52


>11_04_0442 -
           17790811-17790889,17791047-17791114,17791144-17791166,
           17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 780 GRGCMSTVRACP*ECRVRPDPPAFTLHSKRPLSRSYDTFDTNKSKRPSV 634
           G   M+ V  CP +  V P  P   LH+   + RS +       +RP+V
Sbjct: 14  GSAAMAIVDLCPDQIWVTPPQPLSVLHASSSVDRSMERRGAIDLQRPAV 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,784,623
Number of Sequences: 37544
Number of extensions: 693341
Number of successful extensions: 1965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4062238548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)