Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H03.2
         (1303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    42   2e-05
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    34   0.003
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.038
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.47 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 41.5 bits (93), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
 Frame = +2

Query: 653 LLVSNVSYERDNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHTQS-QEGRE 829
           L++++V  + D G + C  +    G +    G    ++    PP + P T  +   EG  
Sbjct: 573 LVITSVQKKGDAGVYTCSAR-NKQGHSARRSGDVAVIV----PPIIEPFTFQEGLSEGMR 627

Query: 830 LNLACSSSGGSPEPTIKWYRDG-SIYPMEAMMTHAKTXAEAQLQPSASTL 976
               C  + G P  TI W +DG S +P+   +  A     +QL P +S L
Sbjct: 628 TRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANI---SQLDPYSSLL 674



 Score = 33.9 bits (74), Expect = 0.003
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 632 PTEGR-FDLLVSNVSYERDNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHT 808
           P  GR  +LL  N     D G ++C V+    G T  +Q  A   L    P  L      
Sbjct: 375 PGTGRQSELLRLNGINREDRGMYQCIVRRS-EGDT--AQASAELQLGNAPPMLLYSFIEQ 431

Query: 809 QSQEGRELNLACSSSGGSPEPTIKWYRDGSIYP 907
             Q G  ++L CS++G +P P + W  DG   P
Sbjct: 432 TLQPGPAVSLKCSAAG-NPTPQVTWALDGFALP 463


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 632 PTEGR-FDLLVSNVSYERDNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHT 808
           P  GR  +LL  N     D G ++C V+    G T  +Q  A   L    P  L      
Sbjct: 375 PGTGRQSELLRLNGINREDRGMYQCIVRRS-EGDT--AQASAELQLGNAPPMLLYSFIEQ 431

Query: 809 QSQEGRELNLACSSSGGSPEPTIKWYRDGSIYP 907
             Q G  ++L CS++G +P P + W  DG   P
Sbjct: 432 TLQPGPAVSLKCSAAG-NPTPQVTWALDGFALP 463



 Score = 32.3 bits (70), Expect = 0.010
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +2

Query: 653 LLVSNVSYERDNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHTQSQE-GRE 829
           L++++V  + D G + C  +    G +    G    ++    PP ++P T  +    G  
Sbjct: 573 LVITSVQKKGDAGVYTCSAR-NKQGHSARRSGDVAVIV----PPKISPFTADRDLHLGER 627

Query: 830 LNLACSSSGGSPEPTIKWYRDG 895
             L CS + G    +I W +DG
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDG 649


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 30.3 bits (65), Expect = 0.038
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +2

Query: 683 DNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHTQSQEGRELNLACSSSGGS 862
           D+G++ C V     G ++ +    LTV   P    + P T T    GR     C+  G +
Sbjct: 281 DSGKYLCIVNNSVGGESVET---VLTVTA-PLGAEIEPSTQT-IDFGRPATFTCNVRG-N 334

Query: 863 PEPTIKWYRDGSIYPME 913
           P  T+ W +DG    +E
Sbjct: 335 PIKTVSWLKDGKPLGLE 351



 Score = 25.4 bits (53), Expect = 1.1
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 653 LLVSNVSYERDNGRFECRVKAGGSGRTLHSQGHALTVLIQPRPPTLTPGTHTQS-QEGRE 829
           L + +V  E D G ++C V+         ++   L +  +  PP +      ++ Q G  
Sbjct: 355 LRIESVKKE-DKGMYQCFVRNDQESAQATAE---LKLGGRFEPPQIRQAFAEETLQPGPS 410

Query: 830 LNLACSSSGGSPEPTIKWYRDG 895
           + L C +SG +P P I W  DG
Sbjct: 411 MFLKCVASG-NPTPEITWELDG 431


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 821 GRELNLACSSSGGSPEPTIKWYRDG-SIYPMEAMMTH 928
           GR++   C ++G  P P I W +DG  +Y  +    H
Sbjct: 37  GRKITFFCMATG-FPRPEITWLKDGIELYHHKFFQVH 72


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 866 EPTIKWYRDGSIYPMEAMMTHA 931
           EP I+ + DGS+Y  +  + HA
Sbjct: 356 EPEIRVFNDGSLYLTKVQLIHA 377



 Score = 24.6 bits (51), Expect = 1.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 803 HTQSQEGRELNLACSSSGGSPEPTIKWYRDGS 898
           H  ++ G  + + C  +G +P P + W R+G+
Sbjct: 319 HISARVGDNVEIKCDVTG-TPPPPLVWRRNGA 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,301
Number of Sequences: 438
Number of extensions: 6429
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)