Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H02.2
         (1242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.16c |spt4||transcription elongation factor complex subu...    66   7e-12
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    28   3.1  

>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 66.5 bits (155), Expect = 7e-12
 Identities = 30/64 (46%), Positives = 39/64 (60%)
 Frame = +3

Query: 282 VSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSGRLPAGVIXXMKXRGIAY 461
           V   TS  F G++A+M P  SWV +WQRI  F  G+YA  V G L   V+  ++ RGI Y
Sbjct: 37  VETFTSPVFEGIMAMMSPTESWVARWQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINY 96

Query: 462 RPRD 473
           RPR+
Sbjct: 97  RPRN 100


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 MLAVMHPEASWVCKWQRISIFCKGVY 392
           MLAV++       +W R SIFCKG+Y
Sbjct: 78  MLAVVNSNED-ARRWIRRSIFCKGIY 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,386
Number of Sequences: 5004
Number of extensions: 27612
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)