Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H02.2
         (1242 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43923-1|AAB07814.1|  117|Homo sapiens SUPT4H protein.                105   3e-22
U38818-1|AAB18674.1|  117|Homo sapiens SUPT4H protein.                105   3e-22
U38817-1|AAB18675.1|  117|Homo sapiens SUPT4H protein.                105   3e-22
CR407663-1|CAG28591.1|  117|Homo sapiens SUPT4H1 protein.             105   3e-22
BC002802-1|AAH02802.1|  117|Homo sapiens suppressor of Ty 4 homo...   105   3e-22
AK129758-1|BAC85230.1|  135|Homo sapiens protein ( Homo sapiens ...    84   9e-16

>U43923-1|AAB07814.1|  117|Homo sapiens SUPT4H protein.
          Length = 117

 Score =  105 bits (253), Expect = 3e-22
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTS 479
           RLP G++  +K RG+AY+ RDT+
Sbjct: 92  RLPQGIVRELKSRGVAYKSRDTA 114


>U38818-1|AAB18674.1|  117|Homo sapiens SUPT4H protein.
          Length = 117

 Score =  105 bits (253), Expect = 3e-22
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTS 479
           RLP G++  +K RG+AY+ RDT+
Sbjct: 92  RLPQGIVRELKSRGVAYKSRDTA 114


>U38817-1|AAB18675.1|  117|Homo sapiens SUPT4H protein.
          Length = 117

 Score =  105 bits (253), Expect = 3e-22
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTS 479
           RLP G++  +K RG+AY+ RDT+
Sbjct: 92  RLPQGIVRELKSRGVAYKSRDTA 114


>CR407663-1|CAG28591.1|  117|Homo sapiens SUPT4H1 protein.
          Length = 117

 Score =  105 bits (253), Expect = 3e-22
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTS 479
           RLP G++  +K RG+AY+ RDT+
Sbjct: 92  RLPQGIVRELKSRGVAYKSRDTA 114


>BC002802-1|AAH02802.1|  117|Homo sapiens suppressor of Ty 4 homolog
           1 (S. cerevisiae) protein.
          Length = 117

 Score =  105 bits (253), Expect = 3e-22
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTS 479
           RLP G++  +K RG+AY+ RDT+
Sbjct: 92  RLPQGIVRELKSRGVAYKSRDTA 114


>AK129758-1|BAC85230.1|  135|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26247 fis, clone DMC01574. ).
          Length = 135

 Score = 84.2 bits (199), Expect = 9e-16
 Identities = 40/84 (47%), Positives = 54/84 (64%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC A+L+M+ ++  V  CTS  F G++A+M PE SWV KWQR+S F  GVYA SV+G
Sbjct: 32  GCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTG 91

Query: 411 RLPAGVIXXMKXRGIAYRPRDTSQ 482
           RLP       +     Y PR++S+
Sbjct: 92  RLPHA--KDSRSNVNKYEPRESSE 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,534,182
Number of Sequences: 237096
Number of extensions: 1192953
Number of successful extensions: 1554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17669839830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)