Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_H02.2
         (1242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt transcrip...    81   1e-15
Z81484-4|CAE17763.1|  191|Caenorhabditis elegans Hypothetical pr...    31   2.2  

>AF099916-1|AAC68775.1|  120|Caenorhabditis elegans Spt
           transcription factor familyprotein 4 protein.
          Length = 120

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +3

Query: 231 GCANCAAFLRMQSHKAXVSACTSXHFXGMLAVMHPEASWVCKWQRISIFCKGVYAXSVSG 410
           GC NC   L ++  +  V  CTS ++ GM+A M    SWVCKWQ++    KG+YA SVSG
Sbjct: 31  GCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSG 90

Query: 411 RLPAGVIXXMKXRGIAYRP--RDTSQR*K 491
            LP  ++  +K  G+ Y+P  RD S + K
Sbjct: 91  VLPNNIVSELKSLGVRYKPNQRDYSTQFK 119


>Z81484-4|CAE17763.1|  191|Caenorhabditis elegans Hypothetical
           protein C47A10.12 protein.
          Length = 191

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 267 FACEEXQHNWHSLTEAXWATWXEQ 196
           ++C+E +HNW    EA W  W  Q
Sbjct: 61  YSCKEDKHNWIMSGEATWGQWNIQ 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,791
Number of Sequences: 27780
Number of extensions: 174030
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)