Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G24.2
         (1235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    31   0.44 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.58 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    30   0.58 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   1.0  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   5.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   9.4  

>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
 Frame = +1

Query: 523 MQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNIPSVNNPAKIGMG 702
           M  V   VY+D +T+ P +  ++    S + +P     +   N   N PSV  P+ +G  
Sbjct: 92  MMNVPIRVYNDADTMDPFS--LDTIPDSSMDMPFDPLASDYGNAA-NFPSV--PSSLGSN 146

Query: 703 PEIINMVMGSSGNKP-KIQESHIAGQVPSSPSRLQGSECAA 822
            + I     +  N+P   Q +HI     SSPS   GS  +A
Sbjct: 147 HQFITTPPVNGSNEPTSAQTNHII-TANSSPSGNAGSNASA 186


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 18/81 (22%), Positives = 40/81 (49%)
 Frame = +1

Query: 481  KLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQ 660
            ++ A+    +NE+L    +K       + +P N+  + P+A+     +Q G+   + ++ 
Sbjct: 1232 RIKAEAQRRMNERLAALGIKPRQKGTPSPAPVNSATSTPVAAPTAQQIQPGK-QASAVSS 1290

Query: 661  NIPSVNNPAKIGMGPEIINMV 723
            N+P+V+  A I   P ++  V
Sbjct: 1291 NVPAVS--ASISTPPAVVPTV 1309


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 472 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTIS 570
           NP ++  D YN     L++ V K  +HD+NT+S
Sbjct: 141 NPSRILLD-YNRAGTPLLEIVTKPCFHDVNTVS 172


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 559 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 657
           +T++P +T  ++   +  GLP  S  TPL+N T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNST 644



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 559 NTISPANTVMNNPIASQIGLPLQSGQTPLNNLT 657
           ++I P +T  ++   +  GLP  S  TPL+N T
Sbjct: 674 SSIVPTSTFTSSGFNTTSGLPTSSASTPLSNST 706



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 559 NTISPANTVMNNPIASQIGLPLQSGQTPLNN 651
           +T++P +T  ++   +  GLP  S  TPL+N
Sbjct: 705 STVAPTSTFTSSGFNTTSGLPTSSVSTPLSN 735


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 756 LNLWLITATTHYHVNNFGTHPYFCWI 679
           L LWL T T  Y +++  +HPY   I
Sbjct: 377 LVLWLPTITEEYGIDDIPSHPYLSLI 402


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +1

Query: 427 PAGSSHVNRPCFGQCNPPKLYAD------TYNYLNEKLMQPVVKEVYHDLNTIS 570
           P G    N+PCF +     +++       T N    K + P   EV  DLNT S
Sbjct: 368 PGGLRRANKPCFNKETKGSIFSKENKGPFTCNPWGAKKVSPPPCEVLADLNTAS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,255,849
Number of Sequences: 5004
Number of extensions: 88047
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)