Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G24.2
         (1235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080...    29   10.0 
08_01_0555 - 4871996-4872652                                           29   10.0 
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291...    29   10.0 

>11_06_0109 +
           20202629-20205452,20206354-20206578,20207208-20208091,
           20208692-20208814
          Length = 1351

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 472 NPPKLYADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLP 621
           N   +  +T+ YL+  L+   + E+  +L T+  +N  ++ P+ S IG P
Sbjct: 581 NMETMLLETF-YLDSNLITGEIPELPINLETLDISNNYLSGPLPSNIGAP 629


>08_01_0555 - 4871996-4872652
          Length = 218

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 834 DGPSAI-GDGNRIPLNGNVNRNEQNVYQNIIPNVQ 935
           DG   + GDG + P  GN+N+N+ N +Q+   N Q
Sbjct: 132 DGVHGVQGDGTQGPQGGNLNQND-NAFQDFFNNFQ 165


>08_01_0325 +
           2917942-2918193,2919057-2919340,2919453-2919549,
           2919677-2919712,2920570-2920715,2920882-2920987,
           2921160-2921219,2921848-2921898
          Length = 343

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 670 SECSVLNYLTGFVLIVMEDRFEMLLGYSSQCL 575
           S  +V N   G   + ++DRFE+L G   +C+
Sbjct: 22  SSSAVENLAAGMAAMSLQDRFELLRGIGEECI 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,982,444
Number of Sequences: 37544
Number of extensions: 538339
Number of successful extensions: 1099
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)