Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G24.2
         (1235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    33   0.55 
Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical p...    29   9.0  

>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
 Frame = +1

Query: 487 YADTYNYLNEKLMQPVVKEVYHDLNTISPANTVMNNPIASQIGLPLQSGQTPLNNLTQNI 666
           Y+    +LN+       K V+ +    S   +   NP+  Q+ LP         + + N 
Sbjct: 265 YSSFNRHLNKNSTNSKPKSVHSESRDSSKQRSTTTNPVQKQVDLPKPKADLTTKHSSSNS 324

Query: 667 PSVNNPAKIGMGPEIINMV---MGSSGNKPK---IQESHIAGQVPSSPSRLQGSECAARV 828
           P     A     P  I+       SS +  K   + + ++A  + S  S++ GSE  + V
Sbjct: 325 PHKLAEASTSKSPSPISECSRRSSSSASTSKNLVVDKHNLAENLKSIVSQVGGSEYTSHV 384

Query: 829 LLTXLLQ 849
            L  + +
Sbjct: 385 SLNKMFE 391


>Z66520-10|CAA91391.2|  600|Caenorhabditis elegans Hypothetical
           protein F49E12.6 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 13  TTRAXFXFPXFAPLQKRLRPLSS 81
           T+R  F FP + P+Q  +RPL S
Sbjct: 510 TSRPRFNFPDYTPVQSTIRPLVS 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,728,878
Number of Sequences: 27780
Number of extensions: 503909
Number of successful extensions: 1224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)