Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G23.2
         (1136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    28   2.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   3.7  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   6.4  

>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 191 PEQQIVEQFVQNVEDFSSQYGSEISVSYT-AFNLRGPPSNFPDYGDYP 331
           P+  + +Q V N E   SQ   EI+ + T    +  P  +FP YG YP
Sbjct: 30  PKDVLADQRVDNTE---SQVKDEITSNITNQTQILLPADSFPQYGSYP 74


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 239 SSQYGSEISVSYTAFNLRGPPSNFPDYGDYPQA 337
           +S YG+  S +Y A     PPSN P   +YP +
Sbjct: 288 TSSYGNGASTNYNASR---PPSNHPHSSNYPSS 317


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 331 RVISVVRKI-GWWTPEVESCI*NTDFTSVLRAKVFNILHKLLYNLL 197
           RVI+    + GWW+  + S     +F S+   ++ N+L ++L  LL
Sbjct: 571 RVITFTHYMPGWWSDNMHSKAVQQEFCSLYSYRIVNLLWEILGILL 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,440
Number of Sequences: 5004
Number of extensions: 62304
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)