Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G20.2
         (1283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    30   0.60 
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    28   3.2  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   5.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   9.8  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = -3

Query: 357 TAXFKGASMKNVLLSKSXIXXXXXAVRGRTVKGVAL----DITXQNMS-KEQRKIWXLRE 193
           T  FK     N+  + S I       +GR +  VAL    DI+  N+S KE ++IW ++ 
Sbjct: 201 TTFFKSFKCLNIKKNSSLILSLHAFSKGRNINPVALWKSSDISSHNVSIKEGKRIWGIQC 260

Query: 192 DRESKNE 172
           + E+  +
Sbjct: 261 NLETSEK 267


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 716 ITKQRGIRILRMDTSSAYSAMSAERLGFNCIYKAAYEDIKLNGEPLIV 859
           I  +RGI   ++D +S +S  S  +L   C+Y++     + NG  L++
Sbjct: 177 IMSRRGIDAFKLDLTSLFSFSSKSQLNALCLYQSKLIVGRDNGTVLVL 224


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 655 YRPELEEKRCNERVIERNGEYHK 723
           +R E   KRCN R +ER   Y+K
Sbjct: 68  HRLEYHLKRCNARPVERTDPYYK 90


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 567 YIF*PEGRKALNLLRNFQMIKFLWILRLQLQTRI 668
           YIF       LNL+ N  ++ FL+++ +++  R+
Sbjct: 83  YIFPTSSMGPLNLVSNLGLVLFLFVIGMEVDLRV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,820,324
Number of Sequences: 5004
Number of extensions: 69649
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)