Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G20.2
         (1283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical pr...    32   1.0  
AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical ...    30   4.1  

>Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical
           protein R05H10.1 protein.
          Length = 250

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
 Frame = +2

Query: 617 PND-KVFVDIKVAATDPNWRRRGVMNELLRETENITKQRGIRILRMDTSSAYSAMSAERL 793
           P+D  + V  ++++    W+R+G+  ++L    +  +   +  +   TSS  +     + 
Sbjct: 126 PSDVNLVVYREISSVGKPWQRQGIATKMLSRNMSAARLHNVDGIVSATSSFANQTLLAKN 185

Query: 794 GFNCIYKAAYEDI-KLNGEPLIVPKEPXVNDAVYIKLL--SGSDPGTLVHNKT*ILHVIT 964
           GF C+ +  Y  I   NG+ L+   +      +  K +  SG+ P  +   K+     + 
Sbjct: 186 GFQCLKEFPYSGIVSSNGDKLVETDDGSHGMRINFKRIEKSGNGPCEMEPPKSATFQNVA 245

Query: 965 TSV 973
           TSV
Sbjct: 246 TSV 248


>AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D7.5 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 617 PNDKVFVDIKVAATDPNWRRRGVMNELLRE--TENITKQRGIRILRMDTSSAYSAMSAER 790
           PN    +  ++ +  P + R+G+   ++    T+   K+  I  +  +TSS  + +  ++
Sbjct: 126 PNVNSIIHREIGSVAPQFTRKGIATRMVTTNMTKTNLKKYNIGGVLSETSSLANQIVLQK 185

Query: 791 LGFNCIYKAAYEDI 832
            GF C+ +  Y  I
Sbjct: 186 AGFKCLKELPYSAI 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,735
Number of Sequences: 27780
Number of extensions: 400251
Number of successful extensions: 919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)