Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G17.2
         (1327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    31   0.47 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   7.7  

>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 304 MNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYL 483
           ++++     M  L +R K  AW A   +  +  N+  S  +     +FM  I+A+V +YL
Sbjct: 27  LSLVSTATCMAALFLRFKLIAWVAFILTFSNLLNANTSPSSSPTSMAFM-GIAALVSTYL 85


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 456 HFSSSNVISSKPCTNDTTLGSSYYMII*NKHIVSVNLQKIKESLL 590
           HFSSS V  S   + +TT GS  +  + NKH+ S + Q + +S L
Sbjct: 82  HFSSSPVEESSTVSPETTTGS--FTPLNNKHLKSQD-QPLSDSQL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,382
Number of Sequences: 5004
Number of extensions: 49706
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)