Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G17.2
         (1327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0016 + 31042619-31042795,31043066-31043170                       56   5e-08
06_03_0395 - 20354713-20355570                                         31   2.7  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   4.7  
11_06_0326 - 22382001-22383248                                         29   6.2  
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669...    29   6.2  
07_03_0177 - 14770777-14772045                                         29   8.2  
09_04_0504 + 18180321-18181013                                         24   9.9  

>03_06_0016 + 31042619-31042795,31043066-31043170
          Length = 93

 Score = 56.4 bits (130), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +1

Query: 220 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTA-VFCSSIS 396
           DPR+    R+Y PP       +DL  DY   L +VF + G+M+R K C+W A +FC+   
Sbjct: 19  DPRQPSTARQYTPP---KLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSL 75

Query: 397 FANSRVSDDTKQIVSSFM 450
                  +D KQ+  +FM
Sbjct: 76  VNMKNFENDLKQLSMAFM 93


>06_03_0395 - 20354713-20355570
          Length = 285

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 232 ADRERRYKPPPPTSAPAE 285
           ADR RR +PPPPT+ P E
Sbjct: 119 ADRGRRRQPPPPTAPPLE 136


>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
            3308247-3308315,3308427-3308513,3308753-3308858,
            3309118-3309237,3309327-3309406,3309497-3309878,
            3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 29/122 (23%), Positives = 30/122 (24%), Gaps = 5/122 (4%)
 Frame = -3

Query: 1214 GFXGXPXXXXPXGXPPXXXXXFXXXX---GGPXXX--PPXXPFXXXPXXAXXXXXFSXXX 1050
            GF   P    P G PP     +       G P     PP  P    P        F    
Sbjct: 17   GFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGP 76

Query: 1049 PXXXXTXXPPXXXXXPXPXPXXXXXXXXXXXXXXXPKXXXPXPXXXXXXLXXXNPPPPPP 870
            P       PP     P P P               P    P             PPPPPP
Sbjct: 77   PQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSA----------PPPPPP 126

Query: 869  XP 864
             P
Sbjct: 127  PP 128


>11_06_0326 - 22382001-22383248
          Length = 415

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 208 QLSADPRRADRERRYKPPPPTSAPA 282
           QL+ADP R  + R   PPPP  APA
Sbjct: 252 QLAADPARKSKPR--APPPPPPAPA 274


>06_01_0873 -
           6693397-6694038,6694231-6694370,6694713-6694930,
           6695040-6695133,6695247-6695483,6696192-6696260,
           6696513-6696636
          Length = 507

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 271 SAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVS 417
           SA     TT YM + G+V      +  L   AW +V  + +SF+ S ++
Sbjct: 189 SADCSVFTTSYMVVFGVVQVFFSQLQSLHEVAWLSVLAAVMSFSYSAIA 237


>07_03_0177 - 14770777-14772045
          Length = 422

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 26/93 (27%), Positives = 26/93 (27%)
 Frame = +1

Query: 853  FXXXGXGGGGGGFXXXKXXXXXXGXGXXXLGXXXXXXXXXXXXXXXGXGXGXXXXXGGXX 1032
            F   G GGGGGGF          G G   LG               G G G     GG  
Sbjct: 67   FGGGGGGGGGGGFG---GGGGFGGGGGGGLGGGGGGGLGGGGGFGKGGGVGGGFGKGGG- 122

Query: 1033 VXXKXGXXXEKXXXXXAXXGXXXXGXXGGFXXG 1131
               K G             G    G  GGF  G
Sbjct: 123  -FGKGGGFGGGFGKGGGIGGGIGHGAGGGFGKG 154


>09_04_0504 + 18180321-18181013
          Length = 230

 Score = 24.2 bits (50), Expect(2) = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +1

Query: 223 PRRA--DRERRYKPPPPTSAPA 282
           P+R+   + RR  PPPP   PA
Sbjct: 119 PKRSKNSKRRRVSPPPPQPVPA 140



 Score = 23.0 bits (47), Expect(2) = 9.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 256 PPPPTSAPAEDL 291
           PPPPT+A A D+
Sbjct: 141 PPPPTTADAADV 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,121,915
Number of Sequences: 37544
Number of extensions: 448159
Number of successful extensions: 7674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6475
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4155355764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)