Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G17.2
         (1327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...   154   2e-37
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    30   3.2  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    27   3.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    25   4.4  
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score =  154 bits (373), Expect = 2e-37
 Identities = 71/110 (64%), Positives = 86/110 (78%), Gaps = 4/110 (3%)
 Frame = +1

Query: 205 MQLSADPRRADRERRYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAWT 372
           MQ + DPRR +R  RYKP   T+    A +ED   +YMN+LGM+FSMCGLM+R+KWC+W 
Sbjct: 1   MQQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWL 60

Query: 373 AVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPWAAL 522
           A+ CS ISFAN+R SDD KQIVSSFMLS+SAVVMSYLQNP+P+ PPW  L
Sbjct: 61  ALVCSCISFANTRTSDDAKQIVSSFMLSVSAVVMSYLQNPSPIIPPWVTL 110


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
            F57C7.4 protein.
          Length = 1484

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +1

Query: 100  LHQTXAQITKLTQIYSLIXXVTATNICGPI---IKSGKMQLSADPRRAD-RERRYKPPPP 267
            LH+T + +  L  + S+I  +    ICG +   +++ K+ +  + RRA+  E +++ PPP
Sbjct: 1398 LHETNSLMIALAVVLSVILGLGTIFICGAVMVKLRTDKL-IVEERRRANLNEHQFQLPPP 1456

Query: 268  TSAPAE 285
               P +
Sbjct: 1457 PEYPVD 1462


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
            protein 1, isoform d protein.
          Length = 759

 Score = 26.6 bits (56), Expect(2) = 3.7
 Identities = 16/54 (29%), Positives = 16/54 (29%)
 Frame = +1

Query: 865  GXGGGGGGFXXXKXXXXXXGXGXXXLGXXXXXXXXXXXXXXXGXGXGXXXXXGG 1026
            G GGGGGGF          G G    G               G G G     GG
Sbjct: 58   GGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGG 111



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 853 FXXXGXGGGGGG 888
           F   G GGGGGG
Sbjct: 50  FFGGGGGGGGGG 61


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 24.6 bits (51), Expect(2) = 4.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 944  PKXXXPXPXXXXXXLXXXNPPPPPP 870
            P    P P      L    PPPPPP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPP 1362



 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 887  PPPPPPXP 864
            PPPPPP P
Sbjct: 1356 PPPPPPPP 1363


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 560 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 396
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 560 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 396
           N N+ +  Y ++  AA  GV+G    ++ + TA++D+ K+ T+     E L+  K
Sbjct: 32  NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,699
Number of Sequences: 27780
Number of extensions: 347172
Number of successful extensions: 2355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3715184046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)