Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G16.2
         (1301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   3.3  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   5.7  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    26   9.9  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 742 KLFSCDKCNYVTHLRARFTKHVKYHS-MPMIKCIVCDFRTPYKWNLXRHMK 891
           ++F CD+C          T+H   HS    I C  C+ +   K  L RH++
Sbjct: 29  RVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQ 79


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 832 KCIVCDFRTPYKWNLXRHMKNH 897
           K ++ D++TPY   L RH+  H
Sbjct: 172 KIVIQDYQTPYGTTLSRHLTTH 193


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +1

Query: 814 HSMPMIKCIVCDFRTPYKWNLXRHMKNHGGIGSL-------NVQCATLLRI*SRVDC 963
           + MP++  +  D+  P  WN    ++  GG   +       N++  T++++   VDC
Sbjct: 602 NDMPIVMLLPDDYNFPKAWNAFEQVRARGGKPIIITDKKLDNLEGFTIIKVPKTVDC 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,290
Number of Sequences: 5004
Number of extensions: 51018
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 711409724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)