Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G14.2
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    31   0.35 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.46 
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   3.2  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   9.9  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 TRSLTSSLTEVKHTKTPDPTMMSLKNAVTPGDVMGLVQSNLPQM 391
           T+S T   T+     T  P  +S KN+ T  ++ G+ +SN+P +
Sbjct: 502 TKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPML 545


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 194  LLLKSVWRNALRNTPICQTR-RHTRSLTSSLTEVKHTKTPDPTMMSLKNA 340
            LLL+S W N + N  I +T+ + T+   S   +V ++K   P  M L  A
Sbjct: 2321 LLLRSSWENVISNVSILRTKFQTTKHKRSPFCQVTYSKVDIPWSMELHAA 2370


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
 Frame = +1

Query: 67  FFFKSYVCSYLSVYYKNXKNKLKSWY---IYNTKQSLY*ILSCDGIIIEERLE-KCTTQH 234
           + +KS +   +  ++ + ++ ++ +     Y + Q +  + + D ++  E+L  +  +  
Sbjct: 116 YIWKSLIPESIFYHFVSLQSFIRKYLTDVFYCSAQKVILLSTDDSVVSSEKLYIRIASIL 175

Query: 235 SNLPNKTTH*KSNVELN*--SETYKDTRSHNDEFEECCNSW*CYGLSSV 375
           SN  +K +  +S++  N    + Y +  SHNDEF    NS  C+  +S+
Sbjct: 176 SNANDKVSFKESSINTNTVFKDVYVEVSSHNDEF-LLKNSSKCWAFTSL 223


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 776 DDMQLLKDMLAYCCHHNLP 832
           D++Q   D+L+YC +H LP
Sbjct: 226 DNIQTKVDLLSYCYNHKLP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,212,297
Number of Sequences: 5004
Number of extensions: 81921
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)