Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_G13.2
(1273 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 59 8e-09
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 32 1.00
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 32 1.00
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 31 2.3
AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical ... 31 2.3
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 30 4.0
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 30 4.0
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 30 4.0
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 58.8 bits (136), Expect = 8e-09
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +1
Query: 94 RARTRALFTFKQVRMICERMLHDQEVALRAEYESVLSTKLAEQYEAFVRFNLDQVQRRPP 273
R+ + FT V+MICER+L QE+ LR E+E VL+ KL EQ++ +V+F +Q+
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNEFEMVLTKKLDEQHQQYVQFAAEQLN---- 202
Query: 274 PSTCMSLGMDAEHMH 318
S C+S G D + +
Sbjct: 203 -SKCVSTGDDYSYSY 216
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical
protein T21H8.1b protein.
Length = 962
Score = 31.9 bits (69), Expect = 1.00
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 323 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 210
+W A P +H +GG +R N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 31.9 bits (69), Expect = 1.00
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 323 SWCMCSASIPSDMHVLGGGRRCT*SRLNLTKASYCSAS 210
+W A P +H +GG +R N+T A YCS S
Sbjct: 436 NWSSAGAGTPRQLHPIGGNQRVN----NITSAQYCSPS 469
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 30.7 bits (66), Expect = 2.3
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 176 YVLSMSLYSAPSLLNSMKPL*GSTWIRCSADPRPARACRSVWTP-NTCTRTSYPAICPN- 349
++L L+SAP+ L G + CS P P+ C + P TCT S PA C
Sbjct: 5 FLLLFLLFSAPASA-FFNSLFGGSNCGCSCTPPPS-TCPTTCLPIMTCTPPSPPACCNTC 62
Query: 350 ---NNMRRKRGVT 379
N RR+R +T
Sbjct: 63 GTCNGKRRRRHLT 75
>AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical
protein K04F1.14b protein.
Length = 506
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 63 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 152
T+SSI +WPTTC C + T DL N
Sbjct: 38 TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 613 CIIKFYTLSKVCNMTNFCQYVENSVVGHLYYIFLLVHQTIQVPVELRRNHN 461
C++ T ++ C + Y++N HL Y+ L+ Q ++ EL +N
Sbjct: 301 CLVWHDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNN 351
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 613 CIIKFYTLSKVCNMTNFCQYVENSVVGHLYYIFLLVHQTIQVPVELRRNHN 461
C++ T ++ C + Y++N HL Y+ L+ Q ++ EL +N
Sbjct: 301 CLVWHDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNN 351
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 613 CIIKFYTLSKVCNMTNFCQYVENSVVGHLYYIFLLVHQTIQVPVELRRNHN 461
C++ T ++ C + Y++N HL Y+ L+ Q ++ EL +N
Sbjct: 301 CLVWHDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNN 351
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 613 CIIKFYTLSKVCNMTNFCQYVENSVVGHLYYIFLLVHQTIQVPVELRRNHN 461
C++ T ++ C + Y++N HL Y+ L+ Q ++ EL +N
Sbjct: 301 CLVWHDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNN 351
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -1
Query: 613 CIIKFYTLSKVCNMTNFCQYVENSVVGHLYYIFLLVHQTIQVPVELRRNHN 461
C++ T ++ C + Y++N HL Y+ L+ Q ++ EL +N
Sbjct: 301 CLVWHDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQCMKHCRELSIPNN 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,796,375
Number of Sequences: 27780
Number of extensions: 570253
Number of successful extensions: 1478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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