Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G12.2
         (1384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    55   2e-08
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    28   2.6  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   4.6  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 4/145 (2%)
 Frame = +1

Query: 367 KGGTRFXQXSAGAVLGASTELALHAPRLXSTRRASRADSVPXNIPLXKRTSRTASPAXLR 546
           +  ++F + +A  +L ++     H   + + R+      +  NIPL    S   S    R
Sbjct: 57  EAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGI--NIPLLADPSHKVS----R 110

Query: 547 SAGR--RXTGIPFRGT--LHHRRTSRNLRQNHHQRTCPWGGRWRXTLRLVQAFQFTDKHG 714
             G      G+ FRG   +  +   R +  N      P G      LRL+ AFQF ++HG
Sbjct: 111 DYGVLIEDAGVAFRGLFLIDPKGVLRQITIND----LPVGRSVDEALRLLDAFQFVEEHG 166

Query: 715 EVCPANWRPGAKXIKPDTKAAQEYF 789
           EVCPANW  G+  I  DTK  ++YF
Sbjct: 167 EVCPANWHKGSDTI--DTKNPEKYF 189


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 749 LAPGLQLAGHTSPCLSVNWN 690
           L P  +L  HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 940 VNILNFTLL*KIISFFSIPEEFTFS 866
           + I NF LL +I +FFS+ +E TFS
Sbjct: 397 LRIHNFPLLGRIHNFFSVAKETTFS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,734
Number of Sequences: 5004
Number of extensions: 42404
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 765063530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)