Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G10.2
         (1299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    48   3e-06
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    31   0.26 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.35 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    28   2.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    28   2.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   7.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   7.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   9.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   9.9  

>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +1

Query: 301 NALPTRQYVXQPVVPILLQGLSALAKXRPPDPINYLAAYLL 423
           N+ P RQY+ + V P+LL+G+  LA+ RP +P+ +L  +LL
Sbjct: 3   NSAPARQYLNEKVTPVLLEGMKILARDRPENPLQFLGQFLL 43


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 256  KANXANAXSKSRLXLNALPTRQYVXQPVVPI 348
            K + AN  SKS L LNA  T+Q   +P++PI
Sbjct: 1061 KLHSANEVSKSLLILNAATTQQITEKPLLPI 1091


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 720 IDYIFSFCQL*CTYAYYKANWYIFSSLLNNRTI 622
           ID  FS C   CT  Y+  N Y+   +LN R +
Sbjct: 81  IDAFFSMCLRSCTIIYFSMNPYMLCEILNARNV 113


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 561 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 457
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -1

Query: 561 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 457
           K  P+I++ +A  +V I +     LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 800 ATPVKQIYNNFLSINYK*NNKNIMAFIQQTTKICF 904
           A P + IY+   S  Y  +N+ IM+ ++QTT   F
Sbjct: 306 ALPFRDIYSGRESSFYDLHNRKIMSLLRQTTTTPF 340


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 313 TRQYVXQPVVPILLQGLSALAKXRPPDPINYLAAYLLKNKTTF 441
           TRQYV +PV     Q    L K  P  P+ Y   Y+  N+  F
Sbjct: 308 TRQYVGRPVTNETRQSYPNLPK--PATPLYYTRRYIDFNRQNF 348


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 292 AWICCXHWLHWLXP 251
           AW C  H +HW+ P
Sbjct: 434 AWTCYPHHIHWIVP 447


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 571 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 455
           SV  ++ S  +EI+  HC H+++ +L  +  L  Y + L
Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,472,725
Number of Sequences: 5004
Number of extensions: 62665
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 709422546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)