Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_G10.2
         (1299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical pr...    62   1e-09
U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.       62   1e-09
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    33   0.33 
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.44 

>Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.6 protein.
          Length = 123

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = +1

Query: 301 NALPTRQYVXQPVVPILLQGLSALAKXRPPDPINYLAAYLLKNKTTFELAN 453
           + +PTRQY+   VVPILLQGL ALAK RP +PI +LA +LL+ K  +   N
Sbjct: 66  STVPTRQYLDSTVVPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116


>U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.
          Length = 123

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 28/51 (54%), Positives = 36/51 (70%)
 Frame = +1

Query: 301 NALPTRQYVXQPVVPILLQGLSALAKXRPPDPINYLAAYLLKNKTTFELAN 453
           + +PTRQY+   VVPILLQGL ALAK RP +PI +LA +LL+ K  +   N
Sbjct: 66  STVPTRQYLDSTVVPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 307 LPTRQ---YVXQPVVPILLQGLSALAKXRPPDPINYLAAYLLK 426
           LPT +   Y+ + V P+L + L+ +   RP DPI ++A +L K
Sbjct: 637 LPTSENGVYLARTVAPVLTKALAEVLLRRPADPIGFIAEWLSK 679


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 316 RQYVXQPVVPILLQGLSALAKXRPPDPINYLAAYL 420
           + Y+   V P L QGL+ +A  RP +PI +LA YL
Sbjct: 149 KDYLSVEVWPKLSQGLARVAVERPDNPIKWLADYL 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,158,544
Number of Sequences: 27780
Number of extensions: 346921
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)