Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_G08.2
(1274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 31 1.5
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 31 2.6
07_03_1686 + 28657337-28658668 30 3.4
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 30 4.5
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 30 4.5
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 29 5.9
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 29 5.9
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 29 7.8
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 29 7.8
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 31.5 bits (68), Expect = 1.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 797 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEE 687
C++ +S CVDA + RG CK G + +P + G E
Sbjct: 273 CVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 797 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEEXXXXXXXXXVYH 651
CI+ +SVCV++ S G C G Q +P LL G + YH
Sbjct: 161 CISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208
>07_03_1686 + 28657337-28658668
Length = 443
Score = 30.3 bits (65), Expect = 3.4
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -1
Query: 551 TAAEVWIEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAILVRAIR-CCLGRLDAPA 375
T A V E SR+ Y+ ++C V+ + F DA LV R G+ PA
Sbjct: 200 TPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPA 259
Query: 374 XYTCHFNWITARICRPFHA-RIKVQTI 297
++ + RI P A RI + I
Sbjct: 260 WFSPELRCLVRRILDPNPATRIDTEEI 286
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 29.9 bits (64), Expect = 4.5
Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Frame = +3
Query: 210 PAMVXPKXPRXVLHPLXAGXSQAXXMLCPDGLHFNPSVEWPAYPCGYPVEVTCVGSGXIQ 389
P P P L P A + + P G NP PA G P G+G
Sbjct: 60 PPPTKPALPAP-LPPTPASPGDSPPSIAPAG---NPPT--PAQ-AGAPPPSIAPGTGSPP 112
Query: 390 PAQTTPDCP--HQYGIFKHPN----ASPTNCGQYRTCVGGRAFDMVCPPGL-AFNPD 539
PA TTP P + G++ N ++ C G DMV PG F PD
Sbjct: 113 PATTTPPAPGAREAGVWCVANPTVASAVAQTAMDYACASGADCDMVAAPGAPCFLPD 169
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 797 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 693
C++ DS CVD+ + G C AG + +P LL G
Sbjct: 263 CVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 727 ATSVLHSTPRLDGASTQTESSAMQRKTQ 810
AT +L PR+DGAS+ S+A R+ Q
Sbjct: 190 ATGILQRFPRVDGASSSASSAADAREVQ 217
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 29.5 bits (63), Expect = 5.9
Identities = 27/84 (32%), Positives = 36/84 (42%)
Frame = -2
Query: 637 LPIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHVRYWPQL 458
+P AS+G G ++P F A+Q G QSQ G N P + RP L
Sbjct: 178 MPAASQG--GALQPTQF-ATQRGM---QSQPPSMGFNQQPPPSSTGFMRPTQPGAPAASL 231
Query: 457 VGEALGCLKMPYWCGQSGVVWAGW 386
G+ G ++P G G AGW
Sbjct: 232 QGQGPGINQVPLGGGSMGAP-AGW 254
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 29.1 bits (62), Expect = 7.8
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Frame = +3
Query: 291 CPDGLHFNPSVEWPAYP---CGYPVEVTCVGSGXIQPAQTTPDCPHQYGIFKHPNASPTN 461
C DG NP + + C P + +C G+ P DCP Y + ++P
Sbjct: 297 CSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTPGSHICDCPRGY---ERNASTPNG 353
Query: 462 CGQYRTC 482
C C
Sbjct: 354 CKDIDEC 360
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 29.1 bits (62), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 546 RCDWADLVPSCDAEKFLGFT 605
+CDW ++ C + FLGFT
Sbjct: 167 QCDWHSILKMCQVQGFLGFT 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,105,328
Number of Sequences: 37544
Number of extensions: 533575
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -